Author: Ehsan Tadayon, MD
Email: ehsan.tadayon84@gmail.com
This repository contains a script to generate following cortical maps in the individual structural MRI space:
- group-based functional networks (Yeo 2011 - 7 or 17 Networks)
- their corresponding confidence maps (Yeo 2011 - Confidence Maps)
It registers Yeo-2011 maps in fsaverage space (normalized space) to individual subject space (both native MRI space and freesurfer modified space) using surface-based reistration.
Citation:
This script was developed as part of a project to stimulate group-based human functional connectome using Transcranial Magnetic Stimulation (TMS) and assessing the brain response using EEG. If you use this script, please cite the following paper:
Ozdemir, R. A., Tadayon, E., Boucher, P., Momi, D., Karakhanyan, K. A., Fox, M. D., ... & Santarnecchi, E. (2020). Individualized perturbation of the human connectome reveals reproducible biomarkers of network dynamics relevant to cognition. Proceedings of the National Academy of Sciences, 117(14), 8115-8125.
How to run:
Download the package completely. Make sure fsaverage_star is downloaded fully. Run the following command within the path that you downloaded the script:
bash yeo2subject.sh <subject> <nNetworks> <subjects_dir>
-
subject: freesurfer processed subject_id
-
nNetworks: 7 or 17
-
subjects_dir: Freesurfer SUBJECTS_DIR