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@EmbryoPhenomics

EmbryoPhenomics

Software and tools associated with the EmbryoPhenomics platform.

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  1. vuba vuba Public

    An easy to use library for constructing OpenCV HighGUI interfaces.

    Python 3

  2. embryo_segmentation embryo_segmentation Public

    Models, weights and scripts for semantic segmentation of embryos in microscopy images. Including popular CNNs such as UNet, PSPnet and DeepLabV3.

    Python 3

  3. embryocv_ept_examples embryocv_ept_examples Public

    Jupyter Notebook 2

  4. embryocv_data_view embryocv_data_view Public

    A little interactive app for visualising individual level phenome data from EmbryoCV.

    Python 2

  5. LabEmbryoCam LabEmbryoCam Public

    Hardware and software for building and running a LabEmbryoCam system for phenotyping aquatic embryos

    Python 2

  6. heartcv heartcv Public

    Software for automated quantification of cardiac traits from video of transparent animals.

    Python 1

Repositories

Showing 10 of 14 repositories
  • embryophenomics Public
    EmbryoPhenomics/embryophenomics’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Mar 20, 2025
  • phenomyx Public

    Phenomyx

    EmbryoPhenomics/phenomyx’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Mar 18, 2025
  • LabEmbryoCam Public

    Hardware and software for building and running a LabEmbryoCam system for phenotyping aquatic embryos

    EmbryoPhenomics/LabEmbryoCam’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Jan 29, 2025
  • dev-resnet Public

    3D ConvNet for automating the detection of developmental events. Weights, training and inference scripts are included.

    EmbryoPhenomics/dev-resnet’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated May 13, 2024
  • heartcv Public

    Software for automated quantification of cardiac traits from video of transparent animals.

    EmbryoPhenomics/heartcv’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Apr 4, 2024
  • embryo_segmentation Public

    Models, weights and scripts for semantic segmentation of embryos in microscopy images. Including popular CNNs such as UNet, PSPnet and DeepLabV3.

    EmbryoPhenomics/embryo_segmentation’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Aug 8, 2023
  • egg_detection Public

    Egg detection in microscopy images using 2D ConvNets. Weights currently available for Lymnaea stagnalis.

    EmbryoPhenomics/egg_detection’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Jul 21, 2023
  • fast_img_compile Public

    Parallel processing script for concatenating image sequences into AVI videos, specifically for MicroManager acquisitions.

    EmbryoPhenomics/fast_img_compile’s past year of commit activity
    Python 1 0 0 0 Updated Apr 15, 2023
  • embryocv_data_view Public

    A little interactive app for visualising individual level phenome data from EmbryoCV.

    EmbryoPhenomics/embryocv_data_view’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Dec 5, 2022
  • fieldep_hardware Public

    CAD files and build guides for FieldEP hardware.

    EmbryoPhenomics/fieldep_hardware’s past year of commit activity
    Io 0 0 0 0 Updated Sep 28, 2022
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