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@Ensembl

Ensembl Project

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  1. ensembl-vep ensembl-vep Public

    The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

    Perl 470 157

  2. WiggleTools WiggleTools Public

    Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency

    C 147 26

  3. VEP_plugins VEP_plugins Public

    Plugins for the Ensembl Variant Effect Predictor (VEP)

    Perl 144 121

  4. ensembl-rest ensembl-rest Public

    Language agnostic RESTful data access to Ensembl data over HTTP

    Perl 142 63

  5. ensembl ensembl Public

    The Ensembl Core Perl API and SQL schema

    Perl 81 77

  6. ensembl-pipeline ensembl-pipeline Public

    *DEPRECATED* Job management for the Ensembl Genebuild pipeline

    Perl 61 29

Repositories

Showing 10 of 211 repositories
  • ensembl-genes Public

    Python Ensembl Gene Annotation code source repository

    Ensembl/ensembl-genes’s past year of commit activity
    Python 4 Apache-2.0 3 0 1 Updated Mar 3, 2025
  • ensembl-compara Public

    The Ensembl Compara Perl API and SQL schema

    Ensembl/ensembl-compara’s past year of commit activity
    Perl 52 Apache-2.0 69 0 7 Updated Mar 3, 2025
  • ensembl-production-metazoa Public

    Metazoan production helper library and script to import ad-hoc annotations.

    Ensembl/ensembl-production-metazoa’s past year of commit activity
    Shell 1 Apache-2.0 1 0 0 Updated Mar 3, 2025
  • nextflow_modules Public

    A collection of shared Ensembl modules used in NextFlow pipelines

    Ensembl/nextflow_modules’s past year of commit activity
    Nextflow 2 0 0 1 Updated Mar 3, 2025
  • ensembl-genes-nf Public

    Ensembl Genebuild NextFlow pipelines

    Ensembl/ensembl-genes-nf’s past year of commit activity
    2 3 0 2 Updated Mar 3, 2025
  • ensembl-production-imported Public

    Production pipelines used by data-teams to process imported genomes (former EnsemblGenomes pipelines)

    Ensembl/ensembl-production-imported’s past year of commit activity
    Perl 1 Apache-2.0 4 0 0 Updated Mar 3, 2025
  • ensembl-client Public

    Ensembl beta client

    Ensembl/ensembl-client’s past year of commit activity
    TypeScript 13 Apache-2.0 4 0 1 Updated Mar 3, 2025
  • ensembl-production Public

    Ensembl Production code

    Ensembl/ensembl-production’s past year of commit activity
    Perl 11 Apache-2.0 42 0 6 Updated Mar 2, 2025
  • VEP_plugins Public

    Plugins for the Ensembl Variant Effect Predictor (VEP)

    Ensembl/VEP_plugins’s past year of commit activity
    Perl 144 Apache-2.0 121 4 3 Updated Feb 28, 2025
  • ensembl-analysis Public

    Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines

    Ensembl/ensembl-analysis’s past year of commit activity
    Perl 18 Apache-2.0 35 0 0 Updated Feb 28, 2025

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