rMATS-turbo_NP

Source code and Supplemental data related to the rMATS-turbo manuscript

Figure 3

• Source code for generating Figure 3 is demonstrated in plot_Fig_PC3E_GS869.ipynb
• Input files for generating Figure 3 is located in folder PC3E-GS689

Figure 4

• Source code for generating Figure 4 is demonstrated in plot_Fig_CCLE.ipynb
• Input files for generating Figure 4 is located in folder CCLE

Requirements

• Jupyter Notebook
• rmats2sashimiplot
• Python related dependencies:
  • rpy2
• R packages
  • zeallot
  • ComplexHeatmap
  • circlize
  • ggplot2
  • ggrepel