Neighbors Server
Neighbors is a package for finding the genomes of one or more target
organisms and their closest relatives, their neighbors. The
Neighbors server, never, provides web access to the facilities of
the Neighbors package.
Bernhard Haubold,
haubold@evolbio.mpg.de
Make the program bin/never
makeGiven a Neighbors datbase in ~/data/neidb, the
server can be run locally on port, say, 8080.
./bin/never -o localhost -p 8080 -d ~/data/neidbSee Neighbors for a description of how to make a Neighbors database.
If never is running as show above, you can download the taxon IDs of
taxa whose name matches Homo sapiens in substring mode. In substring
mode matching is run on the input string wrapped in SQL wild cards,
%, and with blanks replaced by wild cards, so Homo sapiens becomes %Homo%sapiens%
http://localhost:8080/taxi/?t=Homo%20sapiens&s=1Make the Documentation
Make `doc/neverDoc.pdf`.
make doc