adding prior_mixture() and spike-and-slab style model-averaging upgrades
#171
Workflow file for this run
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| name: R-CMD-check | |
| on: | |
| push: | |
| branches: [main, master, pre-release] | |
| pull_request: | |
| branches: [main, master, pre-release] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.config.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: macOS-latest, r: 'release'} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| # Install JAGS and system dependencies on Linux | |
| - name: Install System Dependencies (Linux) | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y \ | |
| libssl-dev \ | |
| libcurl4-openssl-dev \ | |
| libxml2-dev \ | |
| libfontconfig1-dev \ | |
| libharfbuzz-dev \ | |
| libfribidi-dev \ | |
| libfreetype6-dev \ | |
| libpng-dev \ | |
| libtiff5-dev \ | |
| libjpeg-dev \ | |
| libcairo2-dev \ | |
| jags | |
| # Install JAGS on Windows | |
| - name: Install JAGS (Windows) | |
| if: runner.os == 'Windows' | |
| shell: cmd | |
| run: | | |
| curl -o jags-installer.exe -L https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe/download | |
| jags-installer.exe /S | |
| del jags-installer.exe | |
| # Set JAGS environment variables on Windows | |
| - name: Set JAGS environment variables (Windows) | |
| if: runner.os == 'Windows' | |
| shell: cmd | |
| run: | | |
| echo JAGS_ROOT=C:\Program Files\JAGS\JAGS-4.3.1>> %GITHUB_ENV% | |
| echo JAGS_MAJOR_VERSION=4>> %GITHUB_ENV% | |
| echo PATH=C:\Program Files\JAGS\JAGS-4.3.1\bin;%PATH%>> %GITHUB_ENV% | |
| # Install JAGS on macOS | |
| - name: Install JAGS (macOS) | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew update | |
| brew install jags | |
| # Find and Set JAGS Paths | |
| - name: Set Environment Variables (macOS) | |
| if: runner.os == 'macOS' | |
| run: | | |
| JAGS_BIN=$(brew --prefix jags)/bin | |
| echo "JAGS_ROOT=$(brew --prefix jags)" >> $GITHUB_ENV | |
| echo "PATH=$JAGS_BIN:$PATH" >> $GITHUB_ENV | |
| echo "PKG_CONFIG_PATH=$(brew --prefix jags)/lib/pkgconfig" >> $GITHUB_ENV | |
| # Create Symlink for jags-terminal (if necessary) | |
| - name: Create Symlink for jags-terminal (macOS) | |
| if: runner.os == 'macOS' | |
| run: | | |
| sudo mkdir -p $(brew --prefix)/libexec | |
| sudo ln -s $(brew --prefix jags)/bin/jags $(brew --prefix)/libexec/jags-terminal | |
| # Install the package | |
| - name: Install the required packages | |
| run: | | |
| options(repos = c(CRAN = "https://cloud.r-project.org")) | |
| install.packages('devtools') | |
| install.packages('rcmdcheck') | |
| install.packages(c('BayesFactor', 'RoBMA', 'runjags', 'rjags', 'rstan', 'scales', 'vdiffr', 'testthat', 'covr', 'pandoc')) | |
| devtools::install() | |
| shell: Rscript {0} | |
| - name: Check | |
| if: runner.os != 'Windows' | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: | | |
| options(crayon.enabled = TRUE) | |
| rcmdcheck::rcmdcheck( | |
| args = c("--no-manual", "--as-cran", "--ignore-vignettes"), | |
| build_args = c("--no-build-vignettes"), | |
| error_on = "warning", | |
| check_dir = "check") | |
| shell: Rscript {0}" | |
| - name: Check | |
| if: runner.os == 'Windows' | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| JAGS_ROOT: "/c/progra~1/JAGS/JAGS-4.3.1" | |
| JAGS_MAJOR_VERSION: 4 | |
| run: | | |
| options(crayon.enabled = TRUE) | |
| rcmdcheck::rcmdcheck( | |
| args = c("--no-manual", "--as-cran", "--ignore-vignettes"), | |
| build_args = c("--no-build-vignettes"), | |
| error_on = "warning", | |
| check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |