depecrated check_fasta

core/fslibs/FarseerCube.py

@@ -369,13 +369,6 @@ def load_experiments(self, filetype='.csv', resonance_type='Backbone'):
                         format(filetype)
                     self.log_r(fsw.gen_wet('ERROR', msg, 14))
                     self.abort()
-
-                # if filetype == '.fasta' and resonance_type == 'Backbone':
-                    # self.check_fasta(
-                        # target[parts[1]][parts[2]][lessparts],
-                        # parts[2],
-                        # p
-                        # )
 
         self.checks_xy_datapoints_coherency(target, filetype)
 
@@ -463,7 +456,6 @@ def read_FASTA(self, FASTApath):
             )
         logs = '  * {}-{}-{}'.format(self.FASTAstart, FASTA, dd['ResNo'][-1])
         self.log_r(logs)
-        #self.check_fasta(df, FASTApath)
 
         return df
 
@@ -1588,36 +1580,7 @@ def check_ref_res(self, series, ref_res):
             self.abort()
 
         return
-
-    def check_fasta(self, df, yy, fasta_path):
-        """
-        Checks if loaded FASTA file has more residues than the reference
-        experiment.
-        
-        FASTA cannot has less rows than the reference experiment.
-        WET#18
-        
-        Parameters:
-            df (pd.DataFrame): contains the FASTA loaded data in
-                DataFrame format as prepared by .read_FASTA().
-            
-            yy (str): the current YY data point name.
-            
-            fasta_path (srt): the .fasta file path.
-        """
-
-        if df.shape[0] \
-                < self.allpeaklists[self.zzref][yy][self.xxref].\
-                    shape[0]:
-            msg = \
-'The .fasta file in {} has less residue entries than the protein sequence \
-of the reference experiment [{}][{}][{}]'.\
-                format(fasta_path, self.zzref, yy, self.xxref)
-            self.log_r(fsw.gen_wet('ERROR', msg, 18))
-            self.abort()
-
-        return
-
+
     def compare_fastas(self):
         """
         Compares all .fasta files to confirm they have the same size.