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@FrancisCrickInstitute

The Francis Crick Institute

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  1. TRACERx-PHLEX TRACERx-PHLEX Public

    Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging

    Shell 9

  2. Etch-a-Cell-Nuclear-Envelope Etch-a-Cell-Nuclear-Envelope Public

    Python 8 1

  3. OmeSliCC OmeSliCC Public

    Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)

    Python 7 1

  4. ActiveUnetSegmentation ActiveUnetSegmentation Public

    Unet implementation to work with active contours for segmentations. Using keras and tensorflow 1.15 or 2.5.

    Python 5

  5. warpAnnotations warpAnnotations Public

    A tool to transform annotations (such as points, skeletons or meshes) between spatial datasets.

    MATLAB 5

  6. cbias-napari cbias-napari Public

    Introduction to Napari training course

    Jupyter Notebook 5 1

Repositories

Showing 10 of 125 repositories
  • Segment-Flow Public

    Nextflow pipeline for deep learning segmentation models

    FrancisCrickInstitute/Segment-Flow’s past year of commit activity
    Python 2 1 0 0 Updated Sep 20, 2024
  • sparks Public
    FrancisCrickInstitute/sparks’s past year of commit activity
    Jupyter Notebook 4 GPL-3.0 1 0 0 Updated Sep 20, 2024
  • AIoD-Model-Registry Public

    The core registry for all AI models available on AI on Demand

    FrancisCrickInstitute/AIoD-Model-Registry’s past year of commit activity
    Python 0 0 2 0 Updated Sep 19, 2024
  • sparks-ai Public template
    FrancisCrickInstitute/sparks-ai’s past year of commit activity
    HTML 0 0 0 0 Updated Sep 19, 2024
  • uniprot_annotation Public

    A script to collect residue annotations for a list of proteins using the UniProt ID mapping tool

    FrancisCrickInstitute/uniprot_annotation’s past year of commit activity
    Python 0 0 0 0 Updated Sep 18, 2024
  • nextflow-modules Public

    Contains managed modules and subworkflows for Nextflow that can be installed into pipelines

    FrancisCrickInstitute/nextflow-modules’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Sep 16, 2024
  • multi-dimensional-imaging-and-analysis Public
    FrancisCrickInstitute/multi-dimensional-imaging-and-analysis’s past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Sep 13, 2024
  • TYPEx Public

    Deep cell phenoTYPE characterisation using multipleX imaging

    FrancisCrickInstitute/TYPEx’s past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 12, 2024
  • OmeSliCC Public

    Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)

    FrancisCrickInstitute/OmeSliCC’s past year of commit activity
    Python 7 1 0 0 Updated Sep 9, 2024
  • plaque_assay Public

    Analysis code for covid-19 serology neutralisation assay.

    FrancisCrickInstitute/plaque_assay’s past year of commit activity
    Python 0 MIT 0 6 0 Updated Sep 5, 2024
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