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Update to Cromwell 73 and allow for dockerSL

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@vortexing vortexing released this 19 Jan 20:41
· 30 commits to main since this release

This version updates Cromwell to version 73, and also allows for a custom Hutch runtime parameter "dockerSL". This allows users to use, on our on-prem compute cluster, softlinks within the Cromwell Scratch location, even with the use of docker containers. Do not use "dockerSL" as a runtime parameter without talking to Amy first about its implications. It has them. It's a hack plain and simple. But a valuable hack when one is using files >20GB or so, and if used wisely can still create workflows that ARE still portable to other systems (they will just require file copies more when run elsewhere than when Fred Hutch folks use them).