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54 changes: 27 additions & 27 deletions docs/dataset.html
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Expand Up @@ -27,7 +27,7 @@ <h1 class="title">Module <code>mogptk.dataset</code></h1>
<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L1-L719" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L1-L719" class="git-link">Browse git</a>
</summary>
<pre><code class="python">import copy

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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L9-L32" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L9-L32" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def LoadCSV(filename, x_col=0, y_col=1, y_err_col=None, name=None, **kwargs):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L34-L127" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L34-L127" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def LoadDataFrame(df, x_col=0, y_col=1, y_err_col=None, name=None):
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L133-L719" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L133-L719" class="git-link">Browse git</a>
</summary>
<pre><code class="python">class DataSet:
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L304-L320" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L304-L320" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def aggregate(self, duration, f=np.mean):
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L232-L256" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L232-L256" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def append(self, arg):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L258-L268" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L258-L268" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def copy(self):
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L287-L302" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L287-L302" class="git-link">Browse git</a>
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<pre><code class="python">def filter(self, start, end, dim=None):
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L374-L394" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L374-L394" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get(self, index):
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L584-L609" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L584-L609" class="git-link">Browse git</a>
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<pre><code class="python">def get_bnse_estimation(self, Q=1, n=1000, iters=200):
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<details class="source">
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<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L418-L432" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L418-L432" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get_data(self, transformed=False):
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L396-L416" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L396-L416" class="git-link">Browse git</a>
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<pre><code class="python">def get_index(self, index):
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<details class="source">
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<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L335-L346" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L335-L346" class="git-link">Browse git</a>
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<pre><code class="python">def get_input_dims(self):
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<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L558-L582" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L558-L582" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get_ls_estimation(self, Q=1, n=10000):
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<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L361-L372" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L361-L372" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get_names(self):
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L546-L556" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L546-L556" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get_nyquist_estimation(self):
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L348-L359" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L348-L359" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get_output_dims(self):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L466-L479" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L466-L479" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get_prediction_data(self):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L611-L638" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L611-L638" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get_sm_estimation(self, Q=1, method=&#39;BNSE&#39;, optimizer=&#39;Adam&#39;, iters=200, params={}):
&#34;&#34;&#34;
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<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L450-L464" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L450-L464" class="git-link">Browse git</a>
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<pre><code class="python">def get_test_data(self, transformed=False):
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<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L434-L448" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L434-L448" class="git-link">Browse git</a>
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<pre><code class="python">def get_train_data(self, transformed=False):
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<summary>
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<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L322-L333" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L322-L333" class="git-link">Browse git</a>
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<pre><code class="python">def has_test_data(self):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L640-L680" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L640-L680" class="git-link">Browse git</a>
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<pre><code class="python">def plot(self, pred=None, title=None, figsize=None, legend=True, transformed=False):
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<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L682-L719" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L682-L719" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def plot_spectrum(self, title=None, method=&#39;ls&#39;, per=None, maxfreq=None, figsize=None, log=False, transformed=True, n=1001):
&#34;&#34;&#34;
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<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L481-L503" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L481-L503" class="git-link">Browse git</a>
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<pre><code class="python">def set_prediction_data(self, X):
&#34;&#34;&#34;
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<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L505-L544" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L505-L544" class="git-link">Browse git</a>
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<pre><code class="python">def set_prediction_range(self, start, end, n=None, step=None):
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<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/dataset.py#L270-L285" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/dataset.py#L270-L285" class="git-link">Browse git</a>
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<pre><code class="python">def transform(self, transformer):
&#34;&#34;&#34;
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Expand Up @@ -72,6 +72,7 @@ <h1>Index</h1>
<li><a href="examples.html?q=05_Error_Metrics">05 Error Metrics</a></li>
<li><a href="examples.html?q=06_Custom_Kernels_and_Mean_Functions">06 Custom Kernels and Mean Functions</a></li>
<li><a href="examples.html?q=07_Sparse_Multi_Input">07 Sparse Multi Input</a></li>
<li><a href="examples.html?q=08_Multi_Likelihood_Classification">08 Multi Likelihood Classification</a></li>
</ul>
</li>
<li><h3><a href="index.html#header-examples">Examples</a></h3>
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Expand Up @@ -27,7 +27,7 @@ <h1 class="title">Module <code>mogptk.gpr.config</code></h1>
<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/gpr/config.py#L1-L73" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/gpr/config.py#L1-L73" class="git-link">Browse git</a>
</summary>
<pre><code class="python">import torch

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<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/gpr/config.py#L54-L67" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/gpr/config.py#L54-L67" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def print_gpu_information():
&#34;&#34;&#34;
Expand All @@ -145,7 +145,7 @@ <h2 class="section-title" id="header-functions">Functions</h2>
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<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/gpr/config.py#L69-L73" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/gpr/config.py#L69-L73" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def set_positive_minimum(val):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/gpr/config.py#L32-L39" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/gpr/config.py#L32-L39" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def use_cpu(n=None):
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<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/gpr/config.py#L26-L30" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/gpr/config.py#L26-L30" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def use_double_precision():
&#34;&#34;&#34;
Expand All @@ -199,7 +199,7 @@ <h2 class="section-title" id="header-functions">Functions</h2>
<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/gpr/config.py#L41-L52" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/gpr/config.py#L41-L52" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def use_gpu(n=None):
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Expand All @@ -223,7 +223,7 @@ <h2 class="section-title" id="header-functions">Functions</h2>
<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/gpr/config.py#L12-L18" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/gpr/config.py#L12-L18" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def use_half_precision():
&#34;&#34;&#34;
Expand All @@ -242,7 +242,7 @@ <h2 class="section-title" id="header-functions">Functions</h2>
<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ae777b90752156fccdebbbca47263d68264ef6f1/mogptk/gpr/config.py#L20-L24" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/gpr/config.py#L20-L24" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def use_single_precision():
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Expand All @@ -264,7 +264,7 @@ <h2 class="section-title" id="header-classes">Classes</h2>
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<summary>
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<a href="https://github.com/GAMES-UChile/mogptk/blob/5d6df7dd8667923d241fe43f16e1eb262a5192b1/mogptk/gpr/config.py#L3-L9" class="git-link">Browse git</a>
</summary>
<pre><code class="python">class Config:
dtype = torch.float64
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