1.3.0

The highlights for this release are:

• All plots have been updated for better clarity and are now available as both matplotlib and plotly varieties. You can choose the backend by passing backend='matplotlib' or backend='plotly' to the plot methods.
• A trajectory reader for LAMMPS data through Trajectory.from_lammps(...)
• A new method to calculate a jump graph from the Jumps class: G = jumps.to_graph(). The edges are tagged with the activation energies.

What's Changed

• Update Orientations api by @stefsmeets in #303
• Update captions for plots by @stefsmeets in #308
• Add option to show shaded area for std by @stefsmeets in #309
• Add plotly plots by @stefsmeets in #313
• Add shortcut for calculating and plotting RDFs by @stefsmeets in #318
• Add option to switch between plotting backends by @stefsmeets in #326
• Add LAMMPS trajectory reader by @stefsmeets in #327
• Add plotly plot for shape by @SCiarella in #324
• Add method to create a graph from jumps by @stefsmeets in #325

Under the hood

• Refactor Pathway class by @stefsmeets in #305

Bug fixes

• Add warning for multiple paths by @SCiarella in #323
• Tweak method names and update default dimensions by @stefsmeets in #301
• Fix rdf plotly test by @stefsmeets in #320
• Fix ruff config by @stefsmeets in #321

Maintanance

• Add zenodo link and how to cite by @stefsmeets in #304
• Minor housekeeping changes by @stefsmeets in #310
• Move legacy.py out of main library by @stefsmeets in #316
• Move to ruff for autoformatting by @stefsmeets in #317

Full Changelog: 1.2.1...1.3.0