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@GMOD

Generic Model Organism Database Project

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  1. Chado Chado Public

    the GMOD database schema

    PLpgSQL 39 25

  2. jbrowse-components jbrowse-components Public

    Source code for JBrowse 2, a modern React-based genome browser

    TypeScript 214 63

  3. jbrowse jbrowse Public

    JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

    JavaScript 463 198

  4. Apollo Apollo Public

    Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

    Groovy 130 85

Repositories

Showing 10 of 101 repositories
  • jbrowse-plugin-list Public

    List of plugins for the JBrowse 2 plugin store.

    GMOD/jbrowse-plugin-list’s past year of commit activity
    2 5 2 2 Updated Jan 3, 2025
  • jbrowse-plugin-multilevel-linear-view Public

    JBrowse 2 plugin that adds a linear genome view that can show multiple zoom levels

    GMOD/jbrowse-plugin-multilevel-linear-view’s past year of commit activity
    TypeScript 0 Apache-2.0 0 8 0 Updated Jan 3, 2025
  • gff-js Public

    parse and format streams of GFF3, for node or webpack

    GMOD/gff-js’s past year of commit activity
    TypeScript 11 MIT 6 1 2 Updated Jan 3, 2025
  • jbrowse-components Public

    Source code for JBrowse 2, a modern React-based genome browser

    GMOD/jbrowse-components’s past year of commit activity
    TypeScript 214 Apache-2.0 63 308 (5 issues need help) 20 Updated Jan 3, 2025
  • bam-js Public

    Parse BAM and BAM index files in javascript for node and the browser

    GMOD/bam-js’s past year of commit activity
    TypeScript 22 MIT 9 9 1 Updated Jan 2, 2025
  • bgzf-filehandle Public

    Nodejs filehandle for reading bgzip+.gzi compressed files

    GMOD/bgzf-filehandle’s past year of commit activity
    TypeScript 7 MIT 4 5 2 Updated Dec 29, 2024
  • Apollo3 Public

    JBrowse 2 plugin for editing annotations on an Apollo server

    GMOD/Apollo3’s past year of commit activity
    TypeScript 9 Apache-2.0 4 57 12 Updated Dec 20, 2024
  • react-msaview Public

    A multiple sequence alignment viewer

    GMOD/react-msaview’s past year of commit activity
    TypeScript 18 MIT 1 25 0 Updated Dec 19, 2024
  • vcf-js Public

    High performance Variant Call Format (VCF) parser in pure JavaScript

    GMOD/vcf-js’s past year of commit activity
    TypeScript 24 MIT 5 2 1 Updated Dec 19, 2024
  • cram-js Public

    Read CRAM v3 and v2 in node or in the browser

    GMOD/cram-js’s past year of commit activity
    TypeScript 18 MIT 9 8 1 Updated Dec 19, 2024
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