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@GVS-Lab

Mechano-Genomics-Lab

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  1. chrometrics chrometrics Public

    Nuclear Morphology and Chromatin Organization Features

    Jupyter Notebook 4 5

  2. genomic-scoring-breast-cancer-progression genomic-scoring-breast-cancer-progression Public

    Project in which we use image based chromatin(NMCO) features to identify abnormal cells in TMA

    Jupyter Notebook 1 1

  3. germinal_center germinal_center Public

    Python code for the chromatin state analyses of the paper

    Jupyter Notebook 1 1

  4. Chromsome-intermingling-region-indentifcation-and-characterisation-of-protein-levels Chromsome-intermingling-region-indentifcation-and-characterisation-of-protein-levels Public

    Forked from SaradhaVenkatachalapathy/Chromsome-intermingling-region-indentifcation-and-characterisation-of-protein-levels

    Analysis performed for the Belyaeva et.al PNAS 2017 Paper

    R

  5. Latterally_confined_growth_stem_cell_engineering_PNAS_2018 Latterally_confined_growth_stem_cell_engineering_PNAS_2018 Public

    Forked from SaradhaVenkatachalapathy/Latterally_confined_growth_stem_cell_engineering_PNAS_2018

    Transcriptome Analysis performed for the Roy et.al PNAS 2018 Paper

    R

  6. Cell_Shape_TNF_alpha_PNAS_2017 Cell_Shape_TNF_alpha_PNAS_2017 Public

    Forked from SaradhaVenkatachalapathy/Cell_Shape_TNF_alpha_PNAS_2017

    Analysis in the paper Mitra et.al. PNAS 2017.

Repositories

Showing 10 of 15 repositories
  • chromatin_ndd Public

    Code for bachelorsthesis of Dario "Evaluating the Potential of AI-Based Chromatin Imaging Analysis to detect Signals of Neurodegenerative Diseases"

    GVS-Lab/chromatin_ndd’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 15, 2024
  • germinal_center Public

    Python code for the chromatin state analyses of the paper

    GVS-Lab/germinal_center’s past year of commit activity
    Jupyter Notebook 1 1 1 0 Updated Feb 23, 2024
  • chrometrics Public

    Nuclear Morphology and Chromatin Organization Features

    GVS-Lab/chrometrics’s past year of commit activity
    Jupyter Notebook 4 MIT 5 1 0 Updated Feb 15, 2024
  • immune_cell_project Public

    Code for the manuscript: "Single-cell imaging-AI based chromatin biomarkers for proton therapy efficacy in tumor patients using liquid biopsies". Code was developed by Daniel Paysan

    GVS-Lab/immune_cell_project’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 13, 2023
  • genomic-scoring-breast-cancer-progression Public

    Project in which we use image based chromatin(NMCO) features to identify abnormal cells in TMA

    GVS-Lab/genomic-scoring-breast-cancer-progression’s past year of commit activity
    Jupyter Notebook 1 MIT 1 0 0 Updated Nov 18, 2021
  • segmentation_evaluation Public

    Training and testing the nuclear segmentation.

    GVS-Lab/segmentation_evaluation’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 10, 2021
  • MobilePhone_Microscopy Public Forked from d-s-jokhun/MobilePhone_Microscopy
    GVS-Lab/MobilePhone_Microscopy’s past year of commit activity
    MATLAB 0 1 0 0 Updated Aug 30, 2021
  • annotate_images Public Forked from SaradhaVenkatachalapathy/annotate_images

    Interactively generate/edit segmentation labels using napari

    GVS-Lab/annotate_images’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Aug 26, 2021
  • nuclear_segmentation Public

    Nuclear segmentation of microscopy images

    GVS-Lab/nuclear_segmentation’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Sep 28, 2020
  • domain_translation Public
    GVS-Lab/domain_translation’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 22, 2020
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