Make it use the modified commons-cli which also changes the

package name so that we avoid problems when we are in a JVM
where the standard commons cli library already has been loaded
on the boot classpath (e.g. Groovy).

creole.xml

@@ -20,14 +20,14 @@ along with this software. If not, see <http://www.gnu.org/licenses/>.
 -->
 <CREOLE-DIRECTORY
   ID="gate.LearningFramework"
-  VERSION="3.5.3"
+  VERSION="3.6"
   DESCRIPTION="Learning Framework"
   HELPURL="https://github.com/GateNLP/gateplugin-LearningFramework/wiki"
 >
   <JAR scan="true">gateplugin-LearningFramework.jar</JAR>
   <JAR>lib-static/snakeyaml-1.16.jar</JAR> 
   <IVY>build/ivy.xml</IVY>
-  <JAR>lib-static/commons-cli-1.4-modified.jar</JAR>
+  <JAR>lib-static/commons-cli-patched-1.4-SNAPSHOT.jar</JAR>
   <JAR>lib-static/libsvm.jar</JAR>
   <JAR>lib-static/interaction-3.5.1.jar</JAR>
 </CREOLE-DIRECTORY>

src/gate/plugin/learningframework/engines/Parms.java

@@ -26,10 +26,10 @@
 import java.util.HashMap;
 import java.util.List;
 import java.util.Map;
-import org.apache.commons.cli.CommandLine;
-import org.apache.commons.cli.Options;
-import org.apache.commons.cli.DefaultParser;
-import org.apache.commons.cli.ParseException;
+import org.apache.commons.clipatched.CommandLine;
+import org.apache.commons.clipatched.Options;
+import org.apache.commons.clipatched.DefaultParser;
+import org.apache.commons.clipatched.ParseException;
 import org.apache.log4j.Logger;
 
 /**