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37 Open 130 Closed
37 Open 130 Closed
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Issues list

genomic_to_tx_segment should check if a MANE Select transcript is in UTA bug Something isn't working priority:high High priority
#377 opened Nov 12, 2024 by jarbesfeld
1
@jarbesfeld
Add warning for when a coordinate occurs outside of 100 base pairs of the start/end of a transcript enhancement New feature or request priority:medium Medium priority
#372 opened Sep 26, 2024 by katiestahl
@jarbesfeld
Add parameter for using GRCh37 sequences enhancement New feature or request priority:medium Medium priority
#371 opened Sep 25, 2024 by jarbesfeld
1
Ensure that start position does not exceed end position for a transcript segment bug Something isn't working priority:medium Medium priority
#366 opened Sep 5, 2024 by jarbesfeld
@korikuzma
Break up _genomic_to_tx_segment into smaller methods priority:low Low priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#362 opened Aug 20, 2024 by korikuzma
Choosing the Correct Adjacent Exon along Exon Boundaries bug Something isn't working priority:medium Medium priority
#361 opened Aug 20, 2024 by jarbesfeld
3
Add information about Ensembl transcripts to docs documentation Improvements or additions to documentation priority:low Low priority
#342 opened Jul 31, 2024 by korikuzma
Add coordinate type to usage docs documentation Improvements or additions to documentation priority:low Low priority
#341 opened Jul 31, 2024 by korikuzma
@jsstevenson
Move pydantic models to their respective module priority:low Low priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#336 opened Jul 31, 2024 by korikuzma
SeqRepoAccess should support SeqRepoRESTDataProxy enhancement New feature or request priority:medium Medium priority
#307 opened Jul 5, 2024 by korikuzma
1
Consider alternatives to custom genomic table priority:low Low priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#285 opened Apr 30, 2024 by korikuzma
1
Allow initialization of writeable SeqRepo instance enhancement New feature or request priority:low Low priority
#282 opened Apr 8, 2024 by jsstevenson
2
Resolve S608 errors priority:medium Medium priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#269 opened Feb 13, 2024 by korikuzma
2
Reduce the number of tests priority:low Low priority test Changes to test code only
#255 opened Jan 10, 2024 by korikuzma
1
Remove unused methods/functions priority:low Low priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#246 opened Dec 27, 2023 by korikuzma
@korikuzma
1
Better naming in UTA database module priority:low Low priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#245 opened Dec 27, 2023 by korikuzma
1
Revisit PostgreSQL connection code performance Improvements to performance priority:medium Medium priority stale-exempt
#239 opened Dec 27, 2023 by jsstevenson
2
Gene name inputs enhancement New feature or request stale-exempt technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#232 opened Dec 26, 2023 by jsstevenson
1
Clean up ExonGenomicCoordsMapper epic A collection of issues priority:medium Medium priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#224 opened Dec 8, 2023 by korikuzma
@korikuzma
12
Return VRS objects where we can priority:low Low priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#219 opened Nov 3, 2023 by korikuzma
2
Use enum for chromosome parameters enhancement New feature or request priority:low Low priority
#218 opened Nov 3, 2023 by jsstevenson
3
Validate exon offsets in transcript_to_genomic_coordinates() enhancement New feature or request priority:medium Medium priority stale-exempt
#184 opened Aug 7, 2023 by jsstevenson
5
fix condition in get_liftover on if liftover succeeded bug Something isn't working priority:medium Medium priority
#180 opened Aug 2, 2023 by korikuzma
@korikuzma
2
Negative mane transcript positions stale-exempt
#179 opened Aug 1, 2023 by korikuzma
1
Add method to SeqRepoAcces to validate reference sequences enhancement New feature or request priority:low Low priority stale-exempt
#173 opened Jul 18, 2023 by korikuzma
1
ProTip! Updated in the last three days: updated:>2024-11-10.