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GenomicaMicrob authored Dec 6, 2017
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A simple script to detect chimeric sequences in 16S/18S metagenomic samples.

## Release
[chimera_detector.v0.1.1](https://github.com/GenomicaMicrob/chimera_detector/releases/download/v0.1.0/chimera_detector.v0.1.1.sh)
[chimera_detector.v0.1.1](https://github.com/GenomicaMicrob/chimera_detector/releases/download/0.1.1/chimera_detector.v0.1.1.sh)

## Information

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This shell script (bash) was tested in linux Ubuntu.

## Installation
1. Download the [latest](https://github.com/GenomicaMicrob/chimera_detector/releases/latest) release to any directory: `wget https://github.com/GenomicaMicrob/chimera_detector/releases/download/v0.1.0/chimera_detector.v0.1.1.sh` (check the version number)
1. Download the [latest](https://github.com/GenomicaMicrob/chimera_detector/releases/latest) release to any directory: `wget https://github.com/GenomicaMicrob/chimera_detector/releases/download/0.1.1/chimera_detector.v0.1.1.sh` (check the version number)
2. Make the script executable: `chmod +x chimera_detector.v0.1.1.sh`
3. Download the databases from [figshare](https://figshare.com/account/projects/20254/articles/4829176): `wget https://ndownloader.figshare.com/files/8011024` Since the databases are quite big (613 Mb) it might take a while to download. The four databases are compressed into one file.
4. Rename the file, Figshare assigns just a number to the downloaded file, so it is best to give it a meaningful name.: `mv 8011024 mg_pipeline_dbs.tar.gz`
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