Create redundant_facet_removal_backup.py #164
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# dingo : a python library for metabolic networks sampling and analysis | |
# dingo is part of GeomScale project | |
# Copyright (c) 2021-2022 Vissarion Fisikopoulos | |
# Licensed under GNU LGPL.3, see LICENCE file | |
name: dingo-ubuntu | |
on: [push, pull_request] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
#python-version: [2.7, 3.5, 3.6, 3.7, 3.8] | |
python-version: [3.8] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Load submodules | |
run: | | |
git submodule update --init; | |
- name: Download and unzip the boost library | |
run: | | |
wget -O boost_1_76_0.tar.bz2 https://boostorg.jfrog.io/artifactory/main/release/1.76.0/source/boost_1_76_0.tar.bz2; | |
tar xjf boost_1_76_0.tar.bz2; | |
rm boost_1_76_0.tar.bz2; | |
- name: Install dependencies | |
run: | | |
sudo apt-get install libsuitesparse-dev; | |
curl -sSL https://install.python-poetry.org | python3 - --version 1.3.2; | |
poetry --version | |
poetry show -v | |
source $(poetry env info --path)/bin/activate | |
poetry install; | |
pip3 install numpy scipy; | |
- name: Run tests | |
run: | | |
poetry run python3 tests/fba.py; | |
poetry run python3 tests/full_dimensional.py; | |
poetry run python3 tests/max_ball.py; | |
poetry run python3 tests/scaling.py; | |
poetry run python3 tests/sampling.py; | |
poetry run python3 tests/sampling_no_multiphase.py; | |
# currently we do not test with gurobi | |
# python3 tests/fast_implementation_test.py; | |
#run all tests | |
#python -m unittest discover test | |
#TODO: use pytest |