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1. ATG_CRISPResso2_to_RIMA2 ATG_CRISPResso2_to_RIMA2 Public

   This repository contains a python script that (a) annotates MMEJ reads on the CRISPResso outputs, (b) converts CRISPResso Allele_Frequency_Table to variant tables that could be analysed using RIMA.…

   HTML

2. ATG_molbio_excel ATG_molbio_excel Public

   An Excel file for Molecular Biologists' day-to-day use. Conveniently provides useful functions from basic ReverseComplement, and Translate functions to sophisticated Needleman alignment and Motif S…

   Visual Basic 6.0

3. ATG_sgRNA_Annotator ATG_sgRNA_Annotator Public

   An Excel-based tool to annotate CRISPR sgRNAs from literature on a RefSeq genbank file for a given Human or Mouse gene. It can be used for general annotation purposes, too! Both Mac and Windows are…

   VBA 2 1

4. ATG_htmltools-csv-to-datatable ATG_htmltools-csv-to-datatable Public

   Render any csv/tsv file into a responsive, sortable, and searchable HTML datatable without any server-side scripting. A url parameter will be used to point to the CSV file. It can be used as genera…

   HTML

5. ATG_fastq_merger ATG_fastq_merger Public

   A python script that merges illumina NGS paired-end reads using FLASH, collects and save the combination stats in a table.

   Python

6. ATG_fastq_demultiplexer ATG_fastq_demultiplexer Public

   A python script that splits fastq files according to a provided tsv file containing the name of fastq samples, their barcode sequences (begining and end of lines), and their demuxed name.

   Python