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bambu v2.0.0-Bioconductor release
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@cying111 cying111 released this 03 Nov 05:32
v2.0.0
66f1ce3

Major Changes:

  • Implemented a machine learning model to estimate transcript-level novel discovery rate
  • Implemented full length estimates, partial length estimates and unique read counts in final output
  • Improved the performance when extending annotations with simplified code
  • Improved the performance when large amounts of annotations are missing.
  • Implemented a lowMemory option to reduce the memory requirements for very large samples (>100 million reads)

Minor fixes:

  • remove the use of get() which looks into environment variables (prone to crashes if a variable of the same name exists) and directly references the functions that should be used instead.
  • bug fix when a fa file is provdied as a string variable to non-windows system
  • bug fix when no single exon read class in provided samples
  • bug fix when no splice overlaps found between read class and annotations
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