Merge pull request #3552 from shaipranesh2/ferminet_pretraining #29
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| name: Code Formatting | |
| on: | |
| push: # ci work when pushing master branch | |
| branches: | |
| - master | |
| pull_request: # ci work when creating a PR to master branch | |
| branches: | |
| - master | |
| jobs: | |
| linting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set commit range (push to the master branch, e.g. merge) | |
| if: github.ref == 'refs/heads/master' && github.event_name == 'push' | |
| run: echo "COMMIT_RANGE=${{ github.event.before }}.." >> $GITHUB_ENV | |
| - name: Set commit range (pull request) | |
| if: github.event_name == 'pull_request' | |
| run: | | |
| git fetch origin master | |
| echo "COMMIT_RANGE=origin/master..." >> $GITHUB_ENV | |
| - name: Cache pip packages for Linux | |
| if: runner.os == 'Linux' | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('requirements/**') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.9' | |
| - name: Create env.yml | |
| shell: bash | |
| run: | | |
| python -m pip install --upgrade pip; | |
| pip install conda-merge; | |
| cd requirements | |
| conda-merge env_common.yml env_test.yml env_ubuntu.yml tensorflow/env_tensorflow.cpu.yml torch/env_torch.cpu.yml jax/env_jax.cpu.yml > env.yml | |
| cd .. | |
| cp requirements/env.yml env.yml | |
| - name: Install all dependencies using micromamba | |
| uses: mamba-org/provision-with-micromamba@main | |
| with: | |
| environment-file: env.yml | |
| environment-name: deepchem | |
| channels: conda-forge,defaults | |
| extra-specs: python=${{ matrix.python-version }} | |
| - name: Install DeepChem | |
| id: install | |
| shell: bash -l {0} | |
| run: pip install -e . | |
| - name: Show files modified | |
| run: | | |
| CHANGED_FILES=`git diff --name-only $COMMIT_RANGE || true` | |
| echo "changed files are $CHANGED_FILES" | |
| - name: Yapf (version 0.32.0) | |
| id: yapf | |
| shell: bash -l {0} | |
| run: | | |
| CHANGED_FILES=`git diff --name-only $COMMIT_RANGE | grep .py$ || true` | |
| if [ -n "$CHANGED_FILES" ]; then | |
| yapf -d $CHANGED_FILES | |
| fi | |
| - name: Flake8 | |
| if: ${{ (success() || failure()) && (steps.install.outcome == 'failure' || steps.install.outcome == 'success') }} | |
| shell: bash -l {0} | |
| run: source scripts/flake8_for_ci.sh | |
| - name: Mypy | |
| if: ${{ (success() || failure()) && (steps.install.outcome == 'failure' || steps.install.outcome == 'success') }} | |
| shell: bash -l {0} | |
| run: | | |
| mypy -p deepchem |