extract-preprints #1676
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| name: extract-preprints | |
| on: | |
| schedule: | |
| # Run at 01:30 every day | |
| - cron: '30 1 * * *' | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| workflow_dispatch: | |
| jobs: | |
| extract-papers: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.8 | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 pytest | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Extract COVID-19 Preprints | |
| env: | |
| PASSPHRASE: ${{ secrets.PASSPHRASE }} | |
| run: | | |
| mkdir $HOME/secrets | |
| gpg --quiet --batch --yes --decrypt --passphrase="$PASSPHRASE" --output $HOME/secrets/contacts.csv data/contacts.csv.gpg | |
| python3 preprint-extractor.py | |
| - name: Commit extracts to master branch | |
| uses: stefanzweifel/git-auto-commit-action@v4.1.6 | |
| with: | |
| commit_message: Commit new papers and preprints | |
| branch: ${{ github.head_ref }} | |
| commit_user_name: Susheel Varma | |
| commit_user_email: susheel.varma@hdruk.ac.uk | |
| commit_author: Susheel Varma <susheel.varma@hdruk.ac.uk> | |
| - name: Commit extracts to gh-pages branch | |
| uses: stefanzweifel/git-auto-commit-action@v4.1.6 | |
| with: | |
| commit_message: Commit new papers and preprints | |
| branch: gh-pages | |
| commit_user_name: Susheel Varma | |
| commit_user_email: susheel.varma@hdruk.ac.uk | |
| commit_author: Susheel Varma <susheel.varma@hdruk.ac.uk> |