Update CQL Translator Format Options

[c-schuler]

• Fixed CQL translator options format checks

Resolution for #822

[JPercival]

@brynrhodes - Could you look at this too?

[bkaney]

Hi -- This is a pretty big blocker as the current IG Publisher doesn't work with CQL-related projects. @brynrhodes @JPercival - can we get this merged?

[grahamegrieve]

ok

[grahamegrieve]

so I merged this, and now I get:

Translating CQL source (00:00.088 / 00:13.053, 423Mb)
Translating CQL source in folder /Users/grahamegrieve/work/test-igs/example.fhir.uv.myig/input/cql (00:00.000 / 00:13.053, 423Mb)
com.fasterxml.jackson.databind.exc.InvalidFormatException: Cannot deserialize value of type org.cqframework.cql.cql2elm.CqlTranslatorOptions$Format from String "JXSON": not one of the values accepted for Enum class: [JSON, COFFEE, XML]
at [Source: (FileReader); line: 11, column: 6] (through reference chain: org.cqframework.cql.cql2elm.CqlTranslatorOptions["formats"]->java.util.HashSet[1])
at com.fasterxml.jackson.databind.exc.InvalidFormatException.from(InvalidFormatException.java:67)
at com.fasterxml.jackson.databind.DeserializationContext.weirdStringException(DeserializationContext.java:1996)
at com.fasterxml.jackson.databind.DeserializationContext.handleWeirdStringValue(DeserializationContext.java:1224)
at com.fasterxml.jackson.databind.deser.std.EnumDeserializer._deserializeAltString(EnumDeserializer.java:356)
at com.fasterxml.jackson.databind.deser.std.EnumDeserializer._fromString(EnumDeserializer.java:230)
at com.fasterxml.jackson.databind.deser.std.EnumDeserializer.deserialize(EnumDeserializer.java:198)
at com.fasterxml.jackson.databind.deser.std.CollectionDeserializer._deserializeFromArray(CollectionDeserializer.java:359)
at com.fasterxml.jackson.databind.deser.std.CollectionDeserializer.deserialize(CollectionDeserializer.java:244)
at com.fasterxml.jackson.databind.deser.std.CollectionDeserializer.deserialize(CollectionDeserializer.java:28)
at com.fasterxml.jackson.databind.deser.impl.MethodProperty.deserializeAndSet(MethodProperty.java:129)
at com.fasterxml.jackson.databind.deser.BeanDeserializer.deserializeWithUnwrapped(BeanDeserializer.java:727)
at com.fasterxml.jackson.databind.deser.BeanDeserializer.deserializeFromObject(BeanDeserializer.java:347)
at com.fasterxml.jackson.databind.deser.BeanDeserializer.deserialize(BeanDeserializer.java:185)
at com.fasterxml.jackson.databind.deser.DefaultDeserializationContext.readRootValue(DefaultDeserializationContext.java:323)
at com.fasterxml.jackson.databind.ObjectMapper._readMapAndClose(ObjectMapper.java:4730)
at com.fasterxml.jackson.databind.ObjectMapper.readValue(ObjectMapper.java:3690)
at org.cqframework.cql.cql2elm.CqlTranslatorOptionsMapper.fromReader(CqlTranslatorOptionsMapper.java:23)
at org.cqframework.cql.cql2elm.CqlTranslatorOptionsMapper.fromFile(CqlTranslatorOptionsMapper.java:14)
at org.hl7.fhir.igtools.publisher.CqlSubSystem.getTranslatorOptions(CqlSubSystem.java:324)
at org.hl7.fhir.igtools.publisher.CqlSubSystem.translateFolder(CqlSubSystem.java:363)
at org.hl7.fhir.igtools.publisher.CqlSubSystem.execute(CqlSubSystem.java:263)
at org.hl7.fhir.igtools.publisher.Publisher.load(Publisher.java:4525)
at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1123)
at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:974)

[brynrhodes]

This is due to the sample-ig, needs these updates here: FHIR/sample-ig#61