Generate OWL file

HUPO-PSI · Jan 14, 2023 · 2abc976 · 2abc976
1 parent 8bdc5e0
commit 2abc976
Showing 1 changed file with 8 additions and 8 deletions.
diff --git a/psi-ms.owl b/psi-ms.owl
@@ -34,13 +34,13 @@
      xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#"
      xmlns:caloha-reqs-vetted="http://purl.obolibrary.org/obo/caloha-reqs-vetted#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ms.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ms/4.1.109/ms.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ms/4.1.110/ms.owl"/>
         <owl:imports rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
         <owl:imports rdf:resource="http://purl.obolibrary.org/obo/stato.owl"/>
         <oboInOwl:NamespaceIdRule rdf:datatype="http://www.w3.org/2001/XMLSchema#string">* MS:$sequence(7,0,9999999)$</oboInOwl:NamespaceIdRule>
         <oboInOwl:NamespaceIdRule rdf:datatype="http://www.w3.org/2001/XMLSchema#string">* PEFF:$sequence(7,0,9999999)$</oboInOwl:NamespaceIdRule>
         <oboInOwl:auto-generated-by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBO-Edit 2.3.1</oboInOwl:auto-generated-by>
-        <oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">22:12:2022 11:38</oboInOwl:date>
+        <oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">06:01:2023 11:38</oboInOwl:date>
         <oboInOwl:default-namespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:default-namespace>
         <oboInOwl:hasOBOFormatVersion rdf:datatype="http://www.w3.org/2001/XMLSchema#string">1.2</oboInOwl:hasOBOFormatVersion>
         <oboInOwl:saved-by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Joshua Klein</oboInOwl:saved-by>
@@ -51553,15 +51553,15 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1002505">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1002479"/>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">([:digit:]+:[0|1]{1}.[:digit:]+[Ee]{0,1}[+-]{0,1}[:digit:]*:[:digit:]+[|]{1}[:digit:]+:(true|false){1}).</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">(?&lt;MOD_INDEX&gt;[0-9]+):(?&lt;SCORE&gt;[01][.][0-9]+(?:[Ee][+-]?[0-9]+)?):(?&lt;POSITION&gt;[0-9]+(?:[|][0-9]+)*):(?&lt;PASS_THRESHOLD&gt;true|false)</obo:IAO_0000115>
         <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
         <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1002505</oboInOwl:id>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">regular expression for modification localization scoring</rdfs:label>
     </owl:Class>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1002505"/>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
-        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">([:digit:]+:[0|1]{1}.[:digit:]+[Ee]{0,1}[+-]{0,1}[:digit:]*:[:digit:]+[|]{1}[:digit:]+:(true|false){1}).</owl:annotatedTarget>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">(?&lt;MOD_INDEX&gt;[0-9]+):(?&lt;SCORE&gt;[01][.][0-9]+(?:[Ee][+-]?[0-9]+)?):(?&lt;POSITION&gt;[0-9]+(?:[|][0-9]+)*):(?&lt;PASS_THRESHOLD&gt;true|false)</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:PI</oboInOwl:hasDbXref>
     </owl:Axiom>
 
@@ -54985,15 +54985,15 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1002665">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1002479"/>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">([0-9]+)[.]([a|b]):([0-9]+|null):([-+]?[0-9]+(?:[.][0-9]+)?(?:[Ee][+-][0-9]+)?):(true|false)</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">((?&lt;int_ID&gt;[0-9]+)[.](?&lt;SUFFIX&gt;[a|b]):(?&lt;POS&gt;[0-9]+|null):(?&lt;SCORE_OR_VALUE&gt;[-+]?[0-9]+(?:[.][0-9]+)?(?:[Ee][-+]?[0-9]+)?):(?&lt;PASS_THRESHOLD&gt;true|false))|(?&lt;SCORE_ONLY&gt;[-+]?[0-9]+(?:[.][0-9]+)?(?:[Ee][-+]?[0-9]+)?)</obo:IAO_0000115>
         <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
         <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1002665</oboInOwl:id>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">regular expression for interaction scores derived from cross-linking</rdfs:label>
     </owl:Class>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1002665"/>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
-        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">([0-9]+)[.]([a|b]):([0-9]+|null):([-+]?[0-9]+(?:[.][0-9]+)?(?:[Ee][+-][0-9]+)?):(true|false)</owl:annotatedTarget>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">((?&lt;int_ID&gt;[0-9]+)[.](?&lt;SUFFIX&gt;[a|b]):(?&lt;POS&gt;[0-9]+|null):(?&lt;SCORE_OR_VALUE&gt;[-+]?[0-9]+(?:[.][0-9]+)?(?:[Ee][-+]?[0-9]+)?):(?&lt;PASS_THRESHOLD&gt;true|false))|(?&lt;SCORE_ONLY&gt;[-+]?[0-9]+(?:[.][0-9]+)?(?:[Ee][-+]?[0-9]+)?)</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:PI</oboInOwl:hasDbXref>
     </owl:Axiom>
 
@@ -55227,7 +55227,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ms#has_value_type"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/xsd_double"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/xsd_string"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Estimation of the global false discovery rate of proteins-pairs in cross-linking experiments.</obo:IAO_0000115>
@@ -55263,7 +55263,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ms#has_value_type"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/xsd_double"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/xsd_string"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Estimation of the global false discovery rate of residue-pairs in cross-linking experiments.</obo:IAO_0000115>