GHA: Ubuntu 20.04 -> 22.04 #31
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| on: [push] | |
| name: covr | |
| jobs: | |
| covr: | |
| if: "! contains(github.event.head_commit.message, '[ci skip]')" | |
| timeout-minutes: 15 | |
| runs-on: ubuntu-22.04 | |
| name: covr | |
| strategy: | |
| fail-fast: false | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| RSPM: https://packagemanager.rstudio.com/cran/__linux__/jammy/latest | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| ## R CMD check | |
| _R_CHECK_LENGTH_1_CONDITION_: true | |
| _R_CHECK_LENGTH_1_LOGIC2_: true | |
| _R_CHECK_MATRIX_DATA_: true | |
| _R_CHECK_CRAN_INCOMING_: false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: release | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install system dependencies | |
| env: | |
| RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | |
| run: | | |
| Rscript -e "remotes::install_github('r-hub/sysreqs')" | |
| sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") | |
| sudo -s eval "$sysreqs" | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("covr", "sessioninfo")) | |
| remotes::install_deps(dependencies = TRUE) | |
| install.packages(".", repos=NULL, type="source") | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Test coverage | |
| run: | | |
| ## 1. Get 'Repository Upload Token' from Codecov: | |
| ## https://app.codecov.io/gh/<org>/<repo>/settings | |
| ## 2. Set 'CODECOV_TOKEN' in GitHub Secrets: | |
| ## https://github.com/<org>/<repo>/settings/environments/ | |
| coverage <- covr::package_coverage() | |
| print(coverage) | |
| covr::codecov(coverage = coverage, token="${{secrets.CODECOV_TOKEN}}") | |
| shell: Rscript {0} |