XRT DEM Iterative Solver Module#367

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joyvelasquez wants to merge 132 commits intoHinodeXRT:mainfrom

joyvelasquez:xray-plasma-decoder-dem-solver

Commits on Jul 16, 2025

New folder and init for DEM efforts
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Merge branch 'main' into xray-plasma-decoder-dem-solver
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Add new script that will hold DEM code
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Fixing ruff rules
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Adding to make new branch'
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Move xrt_dem_iterative module into xrtpy/
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Merge branch 'main' into xray-plasma-decoder-dem-solver
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Updating new function-calling
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Define main elements
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Commits on Jul 25, 2025

Adding observed_intensities function
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Commits on Jul 26, 2025

Adding observed_intensities function
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Adding a quick for consistency;
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Commits on Jul 29, 2025

Adding functions
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Updated method of naming functions
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Adding XRTDEMIterative class to the init
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Adding intensity_errors function
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Adding conditions to values
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Adding more basic info for using in mandatory functions and check of input
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Applied ruff
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Add basic function to recorde number of MC user wantst to run
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Applied black
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Commits on Jul 30, 2025

Adding max iter
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Commits on Jul 31, 2025

Adding create_logT_grid
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Adding _build_response_matrix
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Trying to get a working initial estimate of how much plasma is emitting at each temperature
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Commits on Aug 11, 2025

Merge branch 'main' into xray-plasma-decoder-dem-solver
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Commits on Aug 25, 2025

Creating a script for monte_carlo_iteration'
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Adding init
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WIP: saving changes before rebase
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Updating path the data file
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Updating init info
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Commits on Aug 26, 2025

Applied Black
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Commits on Aug 27, 2025

Working on solving DEM scale issue
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Commits on Aug 28, 2025

Working on create_logT_grid
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Merge branch 'main' into xray-plasma-decoder-dem-solver
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move the emptiness check above the formatter.
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Tighten the first error block
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little snippet is just a guardrail to make sure your log-T grid is real and big enough
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Forgot to define - n_pts
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Redundant error check block at the end
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Minnor clean up
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Clean up on docstrings
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Trigger the warning only once, store the result
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Clean up on docstrings
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Clean up text
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Updating create_logT_grid
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Applying black
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Updated _interpolate_responses_to_grid
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Removing code where it is used twice for the same reason
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Cleaning up some function logic;
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Commits on Aug 29, 2025

Adding ComputeDEMStatistics
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Script for DEM Stats
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Adding ComputeDEMStatistics
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Removing unsed code
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Applying black
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Minor update to MC code
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If lmfit is required for any normal use (not just testing)
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Syntax error
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missing a validate_inputs() method
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Putting validate_inputs() inside class
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Cleaning codedem_solver.py
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Cleaning code
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Cleaning code - test
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Commits on Sep 2, 2025

Merge branch 'main' into xray-plasma-decoder-dem-solver
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Commits on Sep 12, 2025

Updated info about xrt
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Merge branch 'main' into xray-plasma-decoder-dem-solver
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UPdated with two reference for DEM paper
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WIP: local changes before pull
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WIP: local changes in dem_solver.py
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Commits on Sep 15, 2025

Trying to fix git doc 3.13 failing test
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fixing - generate_temperature_responses reference
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Commits on Sep 16, 2025

Cleaning function
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Clean and updated - create_logT_grid
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Update two functions
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Commits on Sep 17, 2025

Removing_build_response_matrix function
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Removing older version of -_interpolate_responses_to_grid
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Clean code and apply black to triple checked code
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Commits on Sep 19, 2025

Updated solver still needs alot of work - just saving
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Commits on Sep 22, 2025

Moving plotting function to its own script
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Applying black to plotting
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Updated and cleaned out dem_solver main code
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Removed code that is not going to be used
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Removed and cleared out code - will update soon
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Commits on Oct 8, 2025

Merge branch 'main' into xray-plasma-decoder-dem-solver
joyvelasquez
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Commits on Nov 5, 2025

Merge branch 'main' into xray-plasma-decoder-dem-solver
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Appling black
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Commits on Nov 17, 2025

Testingccorrect physical units
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Corrected use of relative_error and added notes to correct/check later
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Updated function names to better understand/reference in code
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Commits on Nov 18, 2025

Debugging-updates made
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Adding code incase - observed intensities are all zero.
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Fixing placement of code
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Commits on Nov 19, 2025

Commits on Nov 20, 2025

Clean up - _estimate_initial_dem and mirror IDL where I forgot to -Use flat dem for inital guess
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Cleaned up code and methods
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Quick clean up
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Commits on Nov 21, 2025

Working on the MC'
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Removing code that will not be used
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Worked on the code method and finally got a DEM and MC to work, main issue - use *result.params*, not params0. I think I finally got the DEM WORKINGGGGGG
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Commits on Nov 22, 2025

Cleaning up plotting to just two.
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Clean up code and added summary function
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Commits on Nov 24, 2025

Cleaned up plotting functions
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Cleaning up minor code issues
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Removed xrt_dem_statistics.py and monte_carlo_iteration.py
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Cleaned up summary function
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Working on test now
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Commits on Nov 25, 2025

Adding more test
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Correction to warning error output
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Adding more test
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spline testing
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Creating test for residuals - dummy data
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Adding more test, and cleaning up formatting
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Now working on docstrings-main function doc
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Updating intensity_errors doc
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Cleaned up doc for _interpolate_responses_to_grid and _estimate_initial_dem
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Commits on Nov 26, 2025

Added more docstrings and code formatting using tools like black, ruff, ect.
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Few string/comment edits
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Cleaning up code and removing comments
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Working on docs site for the DEM
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Commits on Nov 28, 2025

Updating doc site page
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Updating DEM doc site
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Commits on Nov 29, 2025

Few doc edits
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Trying to fix github doc test to pass
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Added three new works-def
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Commits on Jan 14, 2026

Working on test for DEM;
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Commits on Jan 15, 2026

Commits on Jan 21, 2026

Merge remote-tracking branch 'upstream/main' into xray-plasma-decoder-dem-solver
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