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ALIFE 2020 Tutorial
This tutorial will give an overview of MABE, an agent-based research software studying evolving systems and digital brains. MABE supports mixing different types of genomes (heritable and mutable data), brains (digital cognitive architectures), selection methods, and worlds (agent evaluators). This can speed up the time from hypothesis to results since only parts that need to be unique must be coded and combined with more standard already existing components. The modularity in MABE supports collaboration and reuse and also supports research into substrate independence - the ability to alter one aspect of an experiment while holding all others constant in order to isolate causes and effects.
Tuesday, July 14, 15:00 - 16:30 (EST) / Virtual Lecture Hall B
A general overview of MABE design and workflow
An example showing MABE installation and use
An introduction to substrate independence, how MABE supports it, and why you should care about it!
MABE is an open-source project available at:
https://github.com/Hintzelab/MABE
installation and setup instructions can be found here:
https://github.com/Hintzelab/MABE/wiki/Installation-and-getting-started-with-MABE
home
welcome
MABE Parameter Widget
Installation and quick start
license
citations
release notes
developer contributions
consistency testing
Using MABE
Using Settings Files
Output Files
Creating Graphs with python
MABE framework
Defining Update
Brains
Markov Brain
Neuron Gate
Wire Brain
Human Brain
ConstantValues Brain
CGP Brain
Genetic Programing Brain
Artificial Neural Networks
Brains Structure and Connectome
Genomes
Circular Genome
Multi Genome
Genome Handlers
Genome Value Conversions
Organisms
Groups
Archivists
popFileColumns
Optimizers
Lexicase Optimizer
Worlds
Berry World
ComplexiPhi World
MultiThreadTemplate World
Utilities
DataMap
Parameters
Parameters Name Space
Adding Parameters to Code
ParametersTable
MTree
sequence function
Population Loading
PythonTools
MBuild
MGraph
MQ
findRelatedness
generatePhylogeny
Information Theory Tools
Brain States and Life Times
TimeSeries
Entropy Functions
Smearing
Fragmentation
State to State
Brain Infomation Tools
ProcessingTools