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Updated iSPN background, first pass #166

Updated iSPN background, first pass

Updated iSPN background, first pass #166

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: Python package
on: [push]
jobs:
build:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ["3.9", "3.10"]
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v3
with:
python-version: ${{ matrix.python-version }}
- name: Install MPI
run: |
sudo apt-get update
sudo apt-get install openmpi-bin libopenmpi-dev
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install flake8 pytest
python -m pip install open3d
python -m pip install snudda
python -m pip install deepdiff
python -m pip install neuron
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with unittest
run: |
python -m unittest discover tests/