Changed dist_type from distance to uniform

Hjorthmedh · Sep 27, 2024 · 70ee298 · 70ee298
1 parent e383353
commit 70ee298
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diff --git a/data/neurons/striatum/dspn/str-dspn-e150602_c1_D1-mWT-0728MSN01-v20211026/parameters.json b/data/neurons/striatum/dspn/str-dspn-e150602_c1_D1-mWT-0728MSN01-v20211026/parameters.json
diff --git a/data/neurons/striatum/dspn/str-dspn-e150917_c10_D1-mWT-P270-20-v20211026/parameters.json b/data/neurons/striatum/dspn/str-dspn-e150917_c10_D1-mWT-P270-20-v20211026/parameters.json
diff --git a/data/neurons/striatum/dspn/str-dspn-e150917_c6_D1-m21-6-DE-v20211028/parameters.json b/data/neurons/striatum/dspn/str-dspn-e150917_c6_D1-m21-6-DE-v20211028/parameters.json
@@ -212,7 +212,7 @@
         },
         {
             "dist": "((0.1) + (0.9)/(1 + math.exp(({distance}-(40))/(10))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "naf_ms",
             "mech_param": "gbar",
             "param_name": "gbar_naf_ms",
@@ -222,7 +222,7 @@
         },
         {
             "dist": "((1.0) + (0.5)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "kaf_ms",
             "mech_param": "gbar",
             "param_name": "gbar_kaf_ms",
@@ -241,7 +241,7 @@
         },
         {
             "dist": "((1.0) + (9.0)*math.exp(({distance}-(0.0))/(-5.0)))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "kas_ms",
             "mech_param": "gbar",
             "param_name": "gbar_kas_ms",
@@ -296,7 +296,7 @@
         },
         {
             "dist": "((0.0) + (1.0)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "cat32_ms",
             "mech_param": "pbar",
             "param_name": "pbar_cat32_ms",
@@ -306,7 +306,7 @@
         },
         {
             "dist": "((0.0) + (1.0)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "cat33_ms",
             "mech_param": "pbar",
             "param_name": "pbar_cat33_ms",
@@ -546,7 +546,7 @@
         },
         {
             "dist": "((0.1) + (0.9)/(1 + math.exp(({distance}-(40))/(10))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "naf_ms",
             "mech_param": "gbar",
             "param_name": "gbar_naf_ms",
@@ -556,7 +556,7 @@
         },
         {
             "dist": "((1.0) + (0.5)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "kaf_ms",
             "mech_param": "gbar",
             "param_name": "gbar_kaf_ms",
@@ -575,7 +575,7 @@
         },
         {
             "dist": "((1.0) + (9.0)*math.exp(({distance}-(0.0))/(-5.0)))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "kas_ms",
             "mech_param": "gbar",
             "param_name": "gbar_kas_ms",
@@ -630,7 +630,7 @@
         },
         {
             "dist": "((0.0) + (1.0)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "cat32_ms",
             "mech_param": "pbar",
             "param_name": "pbar_cat32_ms",
@@ -640,7 +640,7 @@
         },
         {
             "dist": "((0.0) + (1.0)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "cat33_ms",
             "mech_param": "pbar",
             "param_name": "pbar_cat33_ms",
@@ -667,4 +667,4 @@
             "value": 7.567469632268522e-08
         }
     ]
-}
+}
diff --git a/data/neurons/striatum/dspn/str-dspn-e150917_c9_D1-mWT-1215MSN03-v20211026/parameters.json b/data/neurons/striatum/dspn/str-dspn-e150917_c9_D1-mWT-1215MSN03-v20211026/parameters.json
@@ -212,7 +212,7 @@
         },
         {
             "dist": "((0.1) + (0.9)/(1 + math.exp(({distance}-(40))/(10))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "naf_ms",
             "mech_param": "gbar",
             "param_name": "gbar_naf_ms",
@@ -222,7 +222,7 @@
         },
         {
             "dist": "((1.0) + (0.5)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "kaf_ms",
             "mech_param": "gbar",
             "param_name": "gbar_kaf_ms",
@@ -241,7 +241,7 @@
         },
         {
             "dist": "((1.0) + (9.0)*math.exp(({distance}-(0.0))/(-5.0)))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "kas_ms",
             "mech_param": "gbar",
             "param_name": "gbar_kas_ms",
@@ -296,7 +296,7 @@
         },
         {
             "dist": "((0.0) + (1.0)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "cat32_ms",
             "mech_param": "pbar",
             "param_name": "pbar_cat32_ms",
@@ -306,7 +306,7 @@
         },
         {
             "dist": "((0.0) + (1.0)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "cat33_ms",
             "mech_param": "pbar",
             "param_name": "pbar_cat33_ms",
@@ -546,7 +546,7 @@
         },
         {
             "dist": "((0.1) + (0.9)/(1 + math.exp(({distance}-(40))/(10))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "naf_ms",
             "mech_param": "gbar",
             "param_name": "gbar_naf_ms",
@@ -556,7 +556,7 @@
         },
         {
             "dist": "((1.0) + (0.5)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "kaf_ms",
             "mech_param": "gbar",
             "param_name": "gbar_kaf_ms",
@@ -575,7 +575,7 @@
         },
         {
             "dist": "((1.0) + (9.0)*math.exp(({distance}-(0.0))/(-5.0)))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "kas_ms",
             "mech_param": "gbar",
             "param_name": "gbar_kas_ms",
@@ -630,7 +630,7 @@
         },
         {
             "dist": "((0.0) + (1.0)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "cat32_ms",
             "mech_param": "pbar",
             "param_name": "pbar_cat32_ms",
@@ -640,7 +640,7 @@
         },
         {
             "dist": "((0.0) + (1.0)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "cat33_ms",
             "mech_param": "pbar",
             "param_name": "pbar_cat33_ms",
@@ -880,7 +880,7 @@
         },
         {
             "dist": "((0.1) + (0.9)/(1 + math.exp(({distance}-(40))/(10))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "naf_ms",
             "mech_param": "gbar",
             "param_name": "gbar_naf_ms",
@@ -890,7 +890,7 @@
         },
         {
             "dist": "((1.0) + (0.5)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "kaf_ms",
             "mech_param": "gbar",
             "param_name": "gbar_kaf_ms",
@@ -909,7 +909,7 @@
         },
         {
             "dist": "((1.0) + (9.0)*math.exp(({distance}-(0.0))/(-5.0)))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "kas_ms",
             "mech_param": "gbar",
             "param_name": "gbar_kas_ms",
@@ -964,7 +964,7 @@
         },
         {
             "dist": "((0.0) + (1.0)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "cat32_ms",
             "mech_param": "pbar",
             "param_name": "pbar_cat32_ms",
@@ -974,7 +974,7 @@
         },
         {
             "dist": "((0.0) + (1.0)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "cat33_ms",
             "mech_param": "pbar",
             "param_name": "pbar_cat33_ms",
@@ -1214,7 +1214,7 @@
         },
         {
             "dist": "((0.1) + (0.9)/(1 + math.exp(({distance}-(40))/(10))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "naf_ms",
             "mech_param": "gbar",
             "param_name": "gbar_naf_ms",
@@ -1224,7 +1224,7 @@
         },
         {
             "dist": "((1.0) + (0.5)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "kaf_ms",
             "mech_param": "gbar",
             "param_name": "gbar_kaf_ms",
@@ -1243,7 +1243,7 @@
         },
         {
             "dist": "((1.0) + (9.0)*math.exp(({distance}-(0.0))/(-5.0)))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "kas_ms",
             "mech_param": "gbar",
             "param_name": "gbar_kas_ms",
@@ -1298,7 +1298,7 @@
         },
         {
             "dist": "((0.0) + (1.0)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "cat32_ms",
             "mech_param": "pbar",
             "param_name": "pbar_cat32_ms",
@@ -1308,7 +1308,7 @@
         },
         {
             "dist": "((0.0) + (1.0)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "cat33_ms",
             "mech_param": "pbar",
             "param_name": "pbar_cat33_ms",
@@ -1548,7 +1548,7 @@
         },
         {
             "dist": "((0.1) + (0.9)/(1 + math.exp(({distance}-(40))/(10))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "naf_ms",
             "mech_param": "gbar",
             "param_name": "gbar_naf_ms",
@@ -1558,7 +1558,7 @@
         },
         {
             "dist": "((1.0) + (0.5)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "kaf_ms",
             "mech_param": "gbar",
             "param_name": "gbar_kaf_ms",
@@ -1577,7 +1577,7 @@
         },
         {
             "dist": "((1.0) + (9.0)*math.exp(({distance}-(0.0))/(-5.0)))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "kas_ms",
             "mech_param": "gbar",
             "param_name": "gbar_kas_ms",
@@ -1632,7 +1632,7 @@
         },
         {
             "dist": "((0.0) + (1.0)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "cat32_ms",
             "mech_param": "pbar",
             "param_name": "pbar_cat32_ms",
@@ -1642,7 +1642,7 @@
         },
         {
             "dist": "((0.0) + (1.0)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "cat33_ms",
             "mech_param": "pbar",
             "param_name": "pbar_cat33_ms",
@@ -1882,7 +1882,7 @@
         },
         {
             "dist": "((0.1) + (0.9)/(1 + math.exp(({distance}-(40))/(10))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "naf_ms",
             "mech_param": "gbar",
             "param_name": "gbar_naf_ms",
@@ -1892,7 +1892,7 @@
         },
         {
             "dist": "((1.0) + (0.5)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "kaf_ms",
             "mech_param": "gbar",
             "param_name": "gbar_kaf_ms",
@@ -1911,7 +1911,7 @@
         },
         {
             "dist": "((1.0) + (9.0)*math.exp(({distance}-(0.0))/(-5.0)))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "kas_ms",
             "mech_param": "gbar",
             "param_name": "gbar_kas_ms",
@@ -1966,7 +1966,7 @@
         },
         {
             "dist": "((0.0) + (1.0)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "cat32_ms",
             "mech_param": "pbar",
             "param_name": "pbar_cat32_ms",
@@ -1976,7 +1976,7 @@
         },
         {
             "dist": "((0.0) + (1.0)/(1 + math.exp(({distance}-(120))/(-30))))*{value}",
-            "dist_type": "distance",
+            "dist_type": "uniform",
             "mech": "cat33_ms",
             "mech_param": "pbar",
             "param_name": "pbar_cat33_ms",
@@ -2003,4 +2003,4 @@
             "value": 9.892633782624107e-06
         }
     ]
-}
+}