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@Hjorthmedh
Hjorthmedh committed Feb 15, 2024
1 parent fd09afd commit 95b0257
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Showing 3 changed files with 46 additions and 49 deletions.
52 changes: 24 additions & 28 deletions data/connectivity/GPe/intrapallidal_projections.json
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Original file line number Diff line number Diff line change
@@ -1,67 +1,63 @@
{
"PV,PV" : {
"projection" : {
"file" : "$SNUDDA_DATA/connectivity/projection/intrapallidal_map.json"
"file" : "$SNUDDA_DATA/connectivity/GPe/projection/intrapallidal_map.json"
},
"rotation" : {
"file" : "$SNUDDA_DATA/connectivity/rotation/GPe_rotation_map.json",
"file" : "$SNUDDA_DATA/connectivity/GPe/rotation/GPe_rotation_map.json",
"mapping" : "presynaptic"
},
"morphology" : [
"$SNUDDA_DATA/connectivity/axons/PV_GPe_4.swc",
"$SNUDDA_DATA/connectivity/axons/PV_GPe_3.swc",
"$SNUDDA_DATA/connectivity/axons/PV_GPe_2.swc",
"$SNUDDA_DATA/connectivity/axons/PV_GPe_1.swc"
"$SNUDDA_DATA/neurons/GPe/axons/PV_to_dSTR/PV_GPe_1.swc",
"$SNUDDA_DATA/neurons/GPe/axons/PV_to_dSTR/PV_GPe_2.swc",
"$SNUDDA_DATA/neurons/GPe/axons/PV_to_dSTR/PV_GPe_3.swc",
"$SNUDDA_DATA/neurons/GPe/axons/PV_to_dSTR/PV_GPe_4.swc"
]
},
"PV,FoxP2" : {
"projection" : {
"file" : "$SNUDDA_DATA/connectivity/projection/intrapallidal_map.json"
"file" : "$SNUDDA_DATA/connectivity/GPe/projection/intrapallidal_map.json"
},
"rotation" : {
"file" : "$SNUDDA_DATA/connectivity/rotation/GPe_rotation_map.json",
"file" : "$SNUDDA_DATA/connectivity/GPe/rotation/GPe_rotation_map.json",
"mapping" : "presynaptic"
},
"morphology" : [
"$SNUDDA_DATA/connectivity/axons/PV_GPe_4.swc",
"$SNUDDA_DATA/connectivity/axons/PV_GPe_3.swc",
"$SNUDDA_DATA/connectivity/axons/PV_GPe_2.swc",
"$SNUDDA_DATA/connectivity/axons/PV_GPe_1.swc"
"$SNUDDA_DATA/neurons/GPe/axons/PV_to_GPe/PV_GPe_1.swc",
"$SNUDDA_DATA/neurons/GPe/axons/PV_to_GPe/PV_GPe_2.swc",
"$SNUDDA_DATA/neurons/GPe/axons/PV_to_GPe/PV_GPe_3.swc",
"$SNUDDA_DATA/neurons/GPe/axons/PV_to_GPe/PV_GPe_4.swc"
]
},

"FoxP2,FoxP2" : {
"projection" : {
"file" : "$SNUDDA_DATA/connectivity/projection/intrapallidal_map.json"
"file" : "$SNUDDA_DATA/connectivity/GPe/projection/intrapallidal_map.json"
},
"rotation" : {
"file" : "$SNUDDA_DATA/connectivity/rotation/GPe_rotation_map.json",
"file" : "$SNUDDA_DATA/connectivity/GPe/rotation/GPe_rotation_map.json",
"mapping" : "presynaptic"
},
"morphology" : [
"$SNUDDA_DATA/connectivity/axons/FoxP2_GPe_local_4.swc",
"$SNUDDA_DATA/connectivity/axons/FoxP2_GPe_local_3.swc",
"$SNUDDA_DATA/connectivity/axons/FoxP2_GPe_local_2.swc",
"$SNUDDA_DATA/connectivity/axons/FoxP2_GPe_local_1.swc"
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_GPe/FoxP2_GPe_local_1.swc",
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_GPe/FoxP2_GPe_local_2.swc",
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_GPe/FoxP2_GPe_local_3.swc",
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_GPe/FoxP2_GPe_local_4.swc"
]
},
"FoxP2,PV" : {
"projection" : {
"file" : "$SNUDDA_DATA/connectivity/projection/intrapallidal_map.json"
"file" : "$SNUDDA_DATA/connectivity/GPe/projection/intrapallidal_map.json"
},
"rotation" : {
"file" : "$SNUDDA_DATA/connectivity/rotation/GPe_rotation_map.json",
"file" : "$SNUDDA_DATA/connectivity/GPe/rotation/GPe_rotation_map.json",
"mapping" : "presynaptic"
},
"morphology" : [
"$SNUDDA_DATA/connectivity/axons/FoxP2_GPe_local_4.swc",
"$SNUDDA_DATA/connectivity/axons/FoxP2_GPe_local_3.swc",
"$SNUDDA_DATA/connectivity/axons/FoxP2_GPe_local_2.swc",
"$SNUDDA_DATA/connectivity/axons/FoxP2_GPe_local_1.swc"
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_GPe/FoxP2_GPe_local_1.swc",
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_GPe/FoxP2_GPe_local_2.swc",
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_GPe/FoxP2_GPe_local_3.swc",
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_GPe/FoxP2_GPe_local_4.swc"
]
}




}
28 changes: 14 additions & 14 deletions data/connectivity/GPe/pallidostriatal_projections.json
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Original file line number Diff line number Diff line change
@@ -1,46 +1,46 @@
{
"FoxP2,dSPN" : {
"projection" : {
"file" : "$SNUDDA_DATA/connectivity/projection/pallidostriatal_map.json"
"file" : "$SNUDDA_DATA/connectivity/GPe/projection/pallidostriatal_map.json"
},
"rotation" : {
"file" : "$SNUDDA_DATA/connectivity/rotation/GPe_rotation_map.json",
"file" : "$SNUDDA_DATA/connectivity/GPe/rotation/GPe_rotation_map.json",
"mapping" : "presynaptic"
},
"morphology" : [
"$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_3.swc",
"$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_2.swc",
"$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_1.swc"
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_dSTR_1.swc",
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_dSTR_2.swc",
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_dSTR_3.swc"
]
},

"FoxP2,iSPN" : {
"projection" : {
"file" : "$SNUDDA_DATA/connectivity/projection/pallidostriatal_map.json"
"file" : "$SNUDDA_DATA/connectivity/GPe/projection/pallidostriatal_map.json"
},
"rotation" : {
"file" : "$SNUDDA_DATA/connectivity/rotation/GPe_rotation_map.json",
"mapping" : "presynaptic"
},
"morphology" : [
"$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_3.swc",
"$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_2.swc",
"$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_1.swc"
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_dSTR_1.swc",
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_dSTR_2.swc",
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_dSTR_3.swc"
]
},

"FoxP2,FS" : {
"projection" : {
"file" : "$SNUDDA_DATA/connectivity/projection/pallidostriatal_map.json"
"file" : "$SNUDDA_DATA/connectivity/GPe/projection/pallidostriatal_map.json"
},
"rotation" : {
"file" : "$SNUDDA_DATA/connectivity/rotation/GPe_rotation_map.json",
"file" : "$SNUDDA_DATA/connectivity/GPe/rotation/GPe_rotation_map.json",
"mapping" : "presynaptic"
},
"morphology" : [
"$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_3.swc",
"$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_2.swc",
"$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_1.swc"
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_dSTR_1.swc",
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_dSTR_2.swc",
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_dSTR_3.swc"
]
}
}
15 changes: 8 additions & 7 deletions data/connectivity/GPe/striatopallidal_projections.json
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Original file line number Diff line number Diff line change
Expand Up @@ -4,13 +4,13 @@
"file" : "$SNUDDA_DATA/connectivity/GPe/projection/striatopallidal_map.json"
},
"rotation" : {
"file" : "$SNUDDA_DATA/connectivity/rotation/GPe_rotation_map.json",
"file" : "$SNUDDA_DATA/connectivity/GPe/rotation/GPe_rotation_map.json",
"mapping" : "postsynaptic"
},
"morphology" : [
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_dSTR/FoxP2_dSTR_3.swc",
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_dSTR/FoxP2_dSTR_1.swc",
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_dSTR/FoxP2_dSTR_2.swc",
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_dSTR/FoxP2_dSTR_1.swc"
"$SNUDDA_DATA/neurons/GPe/axons/FoxP2_to_dSTR/FoxP2_dSTR_3.swc"
]
},

Expand All @@ -19,13 +19,14 @@
"file" : "$SNUDDA_DATA/connectivity/projection/striatopallidal_map.json"
},
"rotation" : {
"file" : "$SNUDDA_DATA/connectivity/rotation/GPe_rotation_map.json",
"file" : "$SNUDDA_DATA/connectivity/GPe/rotation/GPe_rotation_map.json",
"mapping" : "postsynaptic"
},
"morphology" : [
"$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_3.swc",
"$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_2.swc",
"$SNUDDA_DATA/connectivity/axons/FoxP2_dSTR_1.swc"
"$SNUDDA_DATA/neurons/GPe/axons/dSTR_to_GPe/dSTR_GPe_1.swc",
"$SNUDDA_DATA/neurons/GPe/axons/dSTR_to_GPe/dSTR_GPe_2.swc",
"$SNUDDA_DATA/neurons/GPe/axons/dSTR_to_GPe/dSTR_GPe_3.swc",
"$SNUDDA_DATA/neurons/GPe/axons/dSTR_to_GPe/dSTR_GPe_4.swc"
]
}
}

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