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Merge pull request #432 from Hjorthmedh/neuromod_redux2
Small RxD fixes etc
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1,083 changes: 1,081 additions & 2 deletions
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examples/notebooks/StriatumExample/CreateStriatum.ipynb
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8 changes: 4 additions & 4 deletions
8
examples/notebooks/neuromodulation/bath_current_injection.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,10 +1,10 @@ | ||
| { | ||
| "0": { | ||
| "time": [0, 0.5, 1, 10], | ||
| "current": [0, 600e-12, 0, 0] | ||
| "time": [0, 10], | ||
| "current": [700e-12, 700e-12] | ||
| }, | ||
| "1": { | ||
| "time": [0, 0.5, 1, 10], | ||
| "current": [0, 500e-12, 0, 0] | ||
| "time": [0, 10], | ||
| "current": [600e-12, 600e-12] | ||
| } | ||
| } |
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42 changes: 42 additions & 0 deletions
42
examples/notebooks/neuromodulation/data/da_experiment_cur_inj_on_bath-find-equilibrium.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,42 @@ | ||
| { | ||
| "network_file": "networks/neuromodulation_bath_current/network-synapses.hdf5", | ||
| "output_file": "networks/neuromodulation_bath_current/simulation/output_neuromodulation_ON.hdf5", | ||
| "log_file": "networks/neuromodulation_bath_current/log/network-simulation-ON.txt", | ||
| "time": 20, | ||
| "sim_dt": 0.001, | ||
| "record_all_soma": true, | ||
| "record_rxd_species_soma": [0, 1], | ||
| "record_density_mechanism": { | ||
| "kir_ms.modulation_factor": { | ||
| "neuron_id": [0, 1], | ||
| "section_id": [-1, -1], | ||
| "section_x": [0.5, 0.5] | ||
| }, | ||
| "naf_ms.modulation_factor": { | ||
| "neuron_id": [0, 1], | ||
| "section_id": [-1, -1], | ||
| "section_x": [0.5, 0.5] | ||
| }, | ||
| "kaf_ms.modulation_factor_g": { | ||
| "neuron_id": [0, 1], | ||
| "section_id": [-1, -1], | ||
| "section_x": [0.5, 0.5] | ||
| }, | ||
| "kaf_ms.modulation_factor_shift": { | ||
| "neuron_id": [0, 1], | ||
| "section_id": [-1, -1], | ||
| "section_x": [0.5, 0.5] | ||
| } | ||
| }, | ||
| "rxd_enable_extracellular": false, | ||
| "bath_application": { | ||
| "DA": { | ||
| "Xtime": [0, 2.499, 2.5, 2.99, 3.0, 3.5, 3.51, 4, 4.01, 20], | ||
| "Xconcentration": [1e-6, 1e-6, 0, 0, 60e-6, 60e-6, 100e-6, 100e-6, 0, 0], | ||
| "time": [0, 100], | ||
| "concentration": [1e-6, 1e-6], | ||
| "interpolate": true | ||
| } | ||
| }, | ||
| "current_injection_file": "bath_current_injection.json" | ||
| } |
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