Updated

examples/notebooks/neuromodulation/data/da_experiment_cur_inj_off_bath.json

@@ -3,6 +3,7 @@
     "output_file": "networks/neuromodulation_bath_current/simulation/output_neuromodulation_OFF.hdf5",
     "log_file": "networks/neuromodulation_bath_current/log/network-simulation-OFF.txt",
     "time": 1.5,
+    "sim_dt": 0.001,
     "record_all_soma": true,
     "record_rxd_species_all": [0, 1],
     "record_density_mechanism": {	

examples/notebooks/neuromodulation/data/da_experiment_cur_inj_on_bath-find-equilibrium.json

@@ -0,0 +1,42 @@
+{
+    "network_file": "networks/neuromodulation_bath_current/network-synapses.hdf5",
+    "output_file": "networks/neuromodulation_bath_current/simulation/output_neuromodulation_ON.hdf5",
+    "log_file": "networks/neuromodulation_bath_current/log/network-simulation-ON.txt",
+    "time": 20,
+    "sim_dt": 0.001,
+    "record_all_soma": true,
+    "record_rxd_species_soma": [0, 1],
+    "record_density_mechanism": {	
+	"kir_ms.modulation_factor": {
+	    "neuron_id": [0, 1],
+	    "section_id": [-1, -1],
+	    "section_x": [0.5, 0.5]
+	},
+	"naf_ms.modulation_factor": {
+	    "neuron_id": [0, 1],
+	    "section_id": [-1, -1],
+	    "section_x": [0.5, 0.5]
+	},
+	"kaf_ms.modulation_factor_g": {
+	    "neuron_id": [0, 1],
+	    "section_id": [-1, -1],
+	    "section_x": [0.5, 0.5]
+	},
+	"kaf_ms.modulation_factor_shift": {
+	    "neuron_id": [0, 1],
+	    "section_id": [-1, -1],
+	    "section_x": [0.5, 0.5]
+	}	
+    },
+    "rxd_enable_extracellular": false,
+    "bath_application": {
+	"DA": {
+	    "Xtime": [0, 2.499, 2.5, 2.99, 3.0, 3.5, 3.51, 4, 4.01, 20],
+	    "Xconcentration": [1e-6, 1e-6, 0, 0, 60e-6, 60e-6, 100e-6, 100e-6, 0, 0],
+	    "time": [0, 100],
+	    "concentration": [1e-6, 1e-6],
+	    "interpolate": true
+	}
+    },
+    "current_injection_file": "bath_current_injection.json"
+}

examples/notebooks/neuromodulation/data/da_experiment_cur_inj_on_bath.json

@@ -31,10 +31,10 @@
     "rxd_enable_extracellular": false,
     "bath_application": {
 	"DA": {
-	    "Xtime": [0, 2.499, 2.5, 2.99, 3.0, 3.5, 3.51, 4, 4.01, 20],
-	    "Xconcentration": [1e-6, 1e-6, 0, 0, 60e-6, 60e-6, 100e-6, 100e-6, 0, 0],
-	    "time": [0, 100],
-	    "concentration": [1e-6, 1e-6],
+	    "time": [0, 0.9999, 1, 10.99, 11.0, 20.999, 21, 30.999, 31, 50],
+	    "concentration": [2e-9, 2e-9, 60e-6, 60e-6, 100e-6, 100e-6, 2e-9, 2e-9, 0, 0],
+	    "!time": [0, 100],
+	    "!concentration": [1e-6, 1e-6],
 	    "interpolate": true
 	}
     },