Updated Neuromodulation code, using RxD #430
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normalise to sum of probabilities for each idx so that sum becomes 1
rotation from vector field uses [0,0,1] as the morphology direction to be aligned with the vector field. This needs to match here, or bent morphologies are not rotated properly with the vector field.
Update bend_morphologies.py
Added minimal current injection example notebook
Updated code for init_tiny
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Codecov ReportAll modified and coverable lines are covered by tests ✅
❗ Your organization needs to install the Codecov GitHub app to enable full functionality. Additional details and impacted files@@ Coverage Diff @@
## master #430 +/- ##
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- Coverage 56.87% 56.75% -0.13%
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Files 82 84 +2
Lines 18484 19282 +798
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+ Hits 10513 10943 +430
- Misses 7971 8339 +368
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Please note that this update changes the way Snudda handels Neuromodulation, we are switching to using the RxD framework. We also extend and generalise the configuration files, see examples in the examples/notebook directory.