Merge pull request #1544 from HumanCellAtlas/ac-gene-annotation-versi…

…on-Issue1543 Added gene_annotation_version field in analysis_protocol.json. Fixes #1543
HumanCellAtlas · Feb 5, 2024 · f658e1f · f658e1f
2 parents 944ebbb + a95dc8c
commit f658e1f
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diff --git a/changelog.md b/changelog.md
@@ -7,6 +7,10 @@ and (starting with v4.0.0) this project adheres to [Semantic Versioning](http://
 
 ## [Unreleased](https://github.com/HumanCellAtlas/metadata-schema/tree/staging)
 
+### [type/protocol/analysis/analysis_protocol.json - v10.2.0] - 2024-02-05
+### Added
+Added gene_annotation_version field in analysis_protocol Fixes#1543
+
 ## [Released](https://github.com/HumanCellAtlas/metadata-schema/)
 
 ### [type/protocol/analysis/analysis_protocol.json - v10.1.0] - 2023-11-07

diff --git a/docs/jsonBrowser/type.md b/docs/jsonBrowser/type.md
@@ -147,6 +147,7 @@ computational_method | A URI to a versioned workflow and versioned execution env
 matrix | Information related to protocols that output a matrix. | object | no | [See module  matrix](module.md#matrix) | Matrix |  | 
 alignment_software | Name of alignment software used to map FASTQ files to reference genome. | string | no |  | Alignment software |  | Cellranger; kallisto bustools; GSNAP; STAR
 alignment_software_version | Version of alignment software used to map FASTQ files to reference genome. | string | no |  | Alignment software version |  | v2.0.1; 2.4.2a; v0.45.2
+gene_annotation_version | The Ensembl release version accession number or NCBI RefSeq assembly version used for gene annotation. | string | no |  | Gene annotation version |  | v110; GCF_000001405.40; GCF_000001635.27
 
 ## Aggregate generation protocol
 _Information about how cultured cells are developed into cell aggregates._

diff --git a/json_schema/type/protocol/analysis/analysis_protocol.json b/json_schema/type/protocol/analysis/analysis_protocol.json
@@ -73,6 +73,13 @@
             "type": "string",
             "user_friendly": "Alignment software version",
             "example": "v2.0.1; 2.4.2a; v0.45.2"
+        },
+        "gene_annotation_version": {
+            "description": "The Ensembl release version accession number or NCBI RefSeq assembly version used for gene annotation.",
+            "type": "string",
+            "pattern": "^v\\d{2,}$|^GCF_\\d{9}\\.\\d+$",
+            "user_friendly": "Gene annotation version",
+            "example": "v110; GCF_000001405.40; GCF_000001635.27"
         }
     }
 }
diff --git a/json_schema/versions.json b/json_schema/versions.json
@@ -1,5 +1,5 @@
 {
-    "last_update_date": "2023-11-07T15:13:34Z",
+    "last_update_date": "2024-02-05T16:10:39Z",
     "version_numbers": {
         "core": {
             "biomaterial": {
@@ -114,7 +114,7 @@
             },
             "protocol": {
                 "analysis": {
-                    "analysis_protocol": "10.1.0"
+                    "analysis_protocol": "10.2.0"
                 },
                 "biomaterial_collection": {
                     "aggregate_generation_protocol": "2.1.0",