Test against Cogent3 develop branch #118
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| name: "Test against Cogent3 develop branch" | |
| on: | |
| schedule: | |
| - cron: '0 21 * * *' # 7am AEST | |
| workflow_dispatch: # support for manual triggering | |
| jobs: | |
| cogent3-dev: | |
| name: "cogent3-dev" | |
| runs-on: ubuntu-latest | |
| if: github.repository == 'HuttleyLab/MutationMotif' | |
| steps: | |
| - uses: "actions/checkout@v4" | |
| with: | |
| fetch-depth: 0 | |
| - uses: "actions/setup-python@v5" | |
| with: | |
| python-version: "3.12" | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v4 | |
| with: | |
| enable-cache: true | |
| - name: Install the cogent3 dev branch | |
| run: | | |
| uv pip install "cogent3 @ git+https://github.com/cogent3/cogent3.git@develop" --system | |
| - name: Install the project | |
| run: | | |
| uv pip install ".[test]" --system | |
| - name: Run tests | |
| run: uv run pytest tests |