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@IARCbioinfo

IARC bioinformatics platform

International Agency for Research on Cancer bioinformatics platform

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  1. IARC-nf IARC-nf Public

    List of IARC bioinformatics nextflow pipelines

    50 10

  2. needlestack needlestack Public

    Multi-sample somatic variant caller

    R 50 15

  3. mutspec mutspec Public

    Mutation Spectra Analysis

    Perl 10 2

  4. alignment-nf alignment-nf Public

    Whole Exome/Whole Genome Sequencing alignment pipeline

    Nextflow 28 14

  5. RNAseq-nf RNAseq-nf Public

    RNAseq analysis pipeline

    HTML 25 10

  6. mutect-nf mutect-nf Public

    Mutect pipeline with Nextflow

    Nextflow 9 7

Repositories

Showing 10 of 119 repositories
  • methylkey Public
    IARCbioinfo/methylkey’s past year of commit activity
    R 2 3 0 0 Updated Apr 7, 2025
  • gama_annot-nf Public

    Annotate VCF files with Annovar

    IARCbioinfo/gama_annot-nf’s past year of commit activity
    R 1 GPL-3.0 2 0 0 Updated Apr 1, 2025
  • dupcaller-nf Public
    IARCbioinfo/dupcaller-nf’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Apr 1, 2025
  • MS_lungNENomics Public

    Repository with scripts from the lungNENomics manuscript

    IARCbioinfo/MS_lungNENomics’s past year of commit activity
    HTML 0 GPL-3.0 1 0 0 Updated Mar 31, 2025
  • MS_SVA Public

    Repository with code used to produce the figures from Morrison et al. doi.org/10.1101/2023.11.23.23298821

    IARCbioinfo/MS_SVA’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Mar 3, 2025
  • MESOMICS_data Public

    Data and scripts associated with MESOMICS paper and data note

    IARCbioinfo/MESOMICS_data’s past year of commit activity
    R 3 GPL-3.0 2 1 0 Updated Feb 24, 2025
  • SComatic-nf Public

    Nextflow pipeline to run somatic alteration calling from single-cell data using SComatic

    IARCbioinfo/SComatic-nf’s past year of commit activity
    Nextflow 2 GPL-3.0 1 4 0 Updated Feb 17, 2025
  • singlecell_scripts Public

    Python scripts for MESOMICS2 single-cell analyses

    IARCbioinfo/singlecell_scripts’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jan 10, 2025
  • IARC-nf Public

    List of IARC bioinformatics nextflow pipelines

    IARCbioinfo/IARC-nf’s past year of commit activity
    50 GPL-3.0 10 0 0 Updated Jan 9, 2025
  • IARCbioinfo/EPIC-RareCancers’s past year of commit activity
    R 0 0 0 0 Updated Dec 12, 2024

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