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Allow to retrieve original quality scores during BAM -> FASTQ #28

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mfoll opened this issue Apr 23, 2020 · 0 comments
Open

Allow to retrieve original quality scores during BAM -> FASTQ #28

mfoll opened this issue Apr 23, 2020 · 0 comments

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@mfoll
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mfoll commented Apr 23, 2020

When quality scores are modified during BQSR and original values are preserved (see #26), we can retrieve them (-O in samtools). This should be an option.
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@mfoll