Merge pull request #20 from cruknagano/develop

Fix the link /roddy/bin/Roddy/dist/runtimeDevel/jre
ICGC-TCGA-PanCancer · Nov 28, 2018 · fd0d44b · fd0d44b
2 parents cb528bc + 0231809
commit fd0d44b
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diff --git a/Dockerfile b/Dockerfile
@@ -100,7 +100,10 @@ ADD scripts/combineJsons.py /roddy/bin/combineJsons.py
 
 ADD scripts/python_modules /roddy/bin/python_modules
 
-RUN cd /roddy/bin/Roddy/dist/runtimeDevel && ln -sf groovy* groovy && ln -sf jdk* jdk && ln -sf jdk/jre jre; \
+RUN cd /roddy/bin/Roddy/dist/runtimeDevel; \
+    ln -sf groovy2.3.6 groovy; \
+    ln -sf jdk1.8.0_20 jdk; \
+    ln -sf jdk1.8.0_20/jre jre; \
     cd /roddy/bin/Roddy && cp applicationPropertiesAllLocal.ini applicationProperties.ini; \
     bash /roddy/sgeResetup.sh; \
     qconf -Mc /roddy/bin/sgeConfig.txt; \

diff --git a/Dockstore.cwl b/Dockstore.cwl
@@ -14,7 +14,7 @@ dct:contributor:
 
 requirements:
 - class: DockerRequirement
-  dockerPull: quay.io/pancancer/pcawg-dkfz-workflow:2.0.6_cwl1.0
+  dockerPull: quay.io/pancancer/pcawg-dkfz-workflow:2.0.7_cwl1.0
 
 cwlVersion: v1.0