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# Documentation | ||
# https://docs.github.com/en/code-security/dependabot/dependabot-version-updates/configuration-options-for-the-dependabot.yml-file | ||
version: 2 | ||
updates: | ||
- package-ecosystem: 'github-actions' | ||
directory: '/' | ||
schedule: | ||
interval: 'monthly' | ||
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- package-ecosystem: 'gitsubmodule' | ||
directory: '/' | ||
schedule: | ||
interval: 'monthly' |
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--- | ||
name: Publish docs via GitHub Pages | ||
on: | ||
push: | ||
branches: | ||
- main | ||
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jobs: | ||
build: | ||
name: Deploy docs | ||
runs-on: ubuntu-latest | ||
if: github.repository_owner == 'INCF' | ||
steps: | ||
- name: Checkout master | ||
uses: actions/checkout@v4 | ||
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- name: Deploy docs | ||
uses: mhausenblas/mkdocs-deploy-gh-pages@master | ||
env: | ||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |
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name: Update spreadsheet | ||
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on: | ||
push: | ||
branches: [ main ] | ||
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# to trigger update manually from the Action tab in github | ||
workflow_dispatch: | ||
inputs: | ||
log: | ||
description: "convert spreadsheet" | ||
required: false | ||
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jobs: | ||
update_spreadsheet: | ||
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runs-on: ubuntu-latest | ||
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if: github.repository_owner == 'INCF' | ||
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steps: | ||
- name: Checkout repository | ||
uses: actions/checkout@v4 | ||
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- name: Set up Python | ||
uses: actions/setup-python@v4 | ||
with: | ||
python-version: 3.9 | ||
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- name: Install dependencies | ||
run: | | ||
python -m pip install --upgrade pip setuptools | ||
make install | ||
- name: Convert table | ||
run: make convert | ||
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# if there have been changes, | ||
# a PR is created using the checkout branch for this workflow | ||
# https://github.com/peter-evans/create-pull-request | ||
- name: Create Pull-Request | ||
uses: peter-evans/create-pull-request@v5 | ||
with: | ||
commit-message: Update spreadsheets | ||
delete-branch: true | ||
title: 'MNT: Update spreadsheets' |
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name: validate jsonld | ||
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on: | ||
push: | ||
branches: | ||
- master | ||
- main | ||
- dev | ||
pull_request: | ||
branches: '*' | ||
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jobs: | ||
build: | ||
runs-on: ubuntu-latest | ||
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if: github.repository_owner == 'INCF' | ||
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# Steps represent a sequence of tasks that will be executed as part of the job | ||
steps: | ||
- name: Setup Node | ||
uses: actions/setup-node@v4 | ||
with: | ||
node-version: "12.x" | ||
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# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | ||
- uses: actions/checkout@v4 | ||
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# Checks that our JSON are valid | ||
- name: Check for syntax errors | ||
run: | | ||
npm install -g jsonlint | ||
grep -r "@context" schemas | cut -d: -f1 | xargs -I fname jsonlint -q fname | ||
# Checks that the schemas are valid | ||
- name: Set up Python | ||
uses: actions/setup-python@v4 | ||
with: | ||
python-version: 3.8 | ||
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- name: Install dependencies | ||
run: | | ||
python -m pip install --upgrade pip setuptools | ||
pip install reproschema requests_cache | ||
- name: Test with pyshacl | ||
run: | | ||
reproschema -l DEBUG validate schemas/artemis/protocols | ||
reproschema -l DEBUG validate schemas/artemis/activities | ||
reproschema -l DEBUG validate schemas/artemis/artemis_schema.jsonld |
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# Byte-compiled / optimized / DLL files | ||
__pycache__/ | ||
*.py[cod] | ||
*$py.class | ||
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# C extensions | ||
*.so | ||
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# Distribution / packaging | ||
.Python | ||
build/ | ||
develop-eggs/ | ||
dist/ | ||
downloads/ | ||
eggs/ | ||
.eggs/ | ||
lib/ | ||
lib64/ | ||
parts/ | ||
sdist/ | ||
var/ | ||
wheels/ | ||
pip-wheel-metadata/ | ||
share/python-wheels/ | ||
*.egg-info/ | ||
.installed.cfg | ||
*.egg | ||
MANIFEST | ||
.DS_Store | ||
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# PyInstaller | ||
# Usually these files are written by a python script from a template | ||
# before PyInstaller builds the exe, so as to inject date/other infos into it. | ||
*.manifest | ||
*.spec | ||
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# Installer logs | ||
pip-log.txt | ||
pip-delete-this-directory.txt | ||
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# Unit test / coverage reports | ||
htmlcov/ | ||
.tox/ | ||
.nox/ | ||
.coverage | ||
.coverage.* | ||
.cache | ||
nosetests.xml | ||
coverage.xml | ||
*.cover | ||
*.py,cover | ||
.hypothesis/ | ||
.pytest_cache/ | ||
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# Translations | ||
*.mo | ||
*.pot | ||
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# Django stuff: | ||
*.log | ||
local_settings.py | ||
db.sqlite3 | ||
db.sqlite3-journal | ||
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# Flask stuff: | ||
instance/ | ||
.webassets-cache | ||
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# Scrapy stuff: | ||
.scrapy | ||
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# Sphinx documentation | ||
docs/_build/ | ||
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# PyBuilder | ||
target/ | ||
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# Jupyter Notebook | ||
.ipynb_checkpoints | ||
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# IPython | ||
profile_default/ | ||
ipython_config.py | ||
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# pyenv | ||
.python-version | ||
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# pipenv | ||
# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. | ||
# However, in case of collaboration, if having platform-specific dependencies or dependencies | ||
# having no cross-platform support, pipenv may install dependencies that don't work, or not | ||
# install all needed dependencies. | ||
#Pipfile.lock | ||
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# PEP 582; used by e.g. github.com/David-OConnor/pyflow | ||
__pypackages__/ | ||
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# Celery stuff | ||
celerybeat-schedule | ||
celerybeat.pid | ||
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# SageMath parsed files | ||
*.sage.py | ||
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# Environments | ||
.env | ||
.venv | ||
env/ | ||
venv/ | ||
ENV/ | ||
env.bak/ | ||
venv.bak/ | ||
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# Spyder project settings | ||
.spyderproject | ||
.spyproject | ||
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# Rope project settings | ||
.ropeproject | ||
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# mkdocs documentation | ||
/site | ||
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# mypy | ||
.mypy_cache/ | ||
.dmypy.json | ||
dmypy.json | ||
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# Pyre type checker | ||
.pyre/ | ||
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# Pycharm | ||
.idea/ |
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# See https://pre-commit.com for more information | ||
# See https://pre-commit.com/hooks.html for more hooks | ||
repos: | ||
- repo: https://github.com/pre-commit/pre-commit-hooks | ||
rev: v4.2.0 | ||
hooks: | ||
- id: trailing-whitespace | ||
- id: check-yaml | ||
- id: check-added-large-files | ||
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- repo: https://github.com/psf/black | ||
rev: "22.6.0" | ||
hooks: | ||
- id: black | ||
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- repo: https://github.com/asottile/reorder_python_imports | ||
rev: "v3.8.2" | ||
hooks: | ||
- id: reorder-python-imports |
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{ | ||
"recommendations": [ | ||
"ms-python.vscode-pylance", | ||
"sourcery.sourcery", | ||
"ms-python.python" | ||
] | ||
} |
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{ | ||
"makefile.extensionOutputFolder": "./.vscode" | ||
} |
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