-
Notifications
You must be signed in to change notification settings - Fork 25
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge pull request #99 from IQSS/dev
Prep to release 0.3.8 to CRAN
- Loading branch information
Showing
27 changed files
with
373 additions
and
188 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,58 @@ | ||
| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | ||
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | ||
| on: | ||
| schedule: | ||
| - cron: "0 7 3 * 0" # Run every morning at 3:07am | ||
|
|
||
| name: R-CMD-check-daily | ||
|
|
||
| jobs: | ||
| R-CMD-check-daily: | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - uses: r-lib/actions/setup-r@v1 | ||
| - uses: r-lib/actions/setup-pandoc@master | ||
|
|
||
| - name: Query dependencies | ||
| run: | | ||
| install.packages('remotes') | ||
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | ||
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Cache R packages | ||
| if: runner.os != 'Windows' | ||
| uses: actions/cache@v1 | ||
| with: | ||
| path: ${{ env.R_LIBS_USER }} | ||
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | ||
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | ||
|
|
||
| - name: Install system dependencies | ||
| if: runner.os == 'Linux' | ||
| env: | ||
| RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | ||
| run: | | ||
| Rscript -e "remotes::install_github('r-hub/sysreqs')" | ||
| sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") | ||
| sudo -s eval "$sysreqs" | ||
| - name: Install dependencies | ||
| run: | | ||
| install.packages(c("remotes", "rcmdcheck")) | ||
| remotes::install_deps(dependencies = TRUE) | ||
| remotes::install_cran("covr") | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Check | ||
| run: | | ||
| options(crayon.enabled = TRUE) | ||
| rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Test coverage | ||
| run: covr::codecov() | ||
| shell: Rscript {0} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,65 @@ | ||
| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | ||
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | ||
| on: | ||
| push: | ||
| branches: | ||
| - dev | ||
| # - main | ||
| # - master | ||
| # pull_request: | ||
| # branches: | ||
| # - main | ||
| # - master | ||
|
|
||
| name: R-CMD-check-dev | ||
|
|
||
| jobs: | ||
| R-CMD-check-dev: | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - uses: r-lib/actions/setup-r@v1 | ||
| - uses: r-lib/actions/setup-pandoc@master | ||
|
|
||
| - name: Query dependencies | ||
| run: | | ||
| install.packages('remotes') | ||
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | ||
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Cache R packages | ||
| if: runner.os != 'Windows' | ||
| uses: actions/cache@v1 | ||
| with: | ||
| path: ${{ env.R_LIBS_USER }} | ||
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | ||
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | ||
|
|
||
| - name: Install system dependencies | ||
| if: runner.os == 'Linux' | ||
| env: | ||
| RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | ||
| run: | | ||
| Rscript -e "remotes::install_github('r-hub/sysreqs')" | ||
| sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") | ||
| sudo -s eval "$sysreqs" | ||
| - name: Install dependencies | ||
| run: | | ||
| install.packages(c("remotes", "rcmdcheck")) | ||
| remotes::install_deps(dependencies = TRUE) | ||
| remotes::install_cran("covr") | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Check | ||
| run: | | ||
| options(crayon.enabled = TRUE) | ||
| rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Test coverage | ||
| run: covr::codecov() | ||
| shell: Rscript {0} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,109 @@ | ||
| # NOTE: This workflow is overkill for most R packages | ||
| # check-standard.yaml is likely a better choice | ||
| # usethis::use_github_action("check-standard") will install it. | ||
| # | ||
| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | ||
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | ||
| on: | ||
| push: | ||
| branches: | ||
| - main | ||
| - master | ||
| # - dev | ||
|
|
||
| pull_request: | ||
| branches: | ||
| - main | ||
| - master | ||
|
|
||
| name: R-CMD-check-thorough | ||
|
|
||
| jobs: | ||
| R-CMD-check-thorough: | ||
| runs-on: ${{ matrix.config.os }} | ||
|
|
||
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | ||
|
|
||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| config: | ||
| - {os: macOS-latest, r: 'release'} | ||
| - {os: windows-latest, r: 'devel'} | ||
| - {os: windows-latest, r: 'release'} | ||
| # - {os: windows-latest, r: '3.6'} | ||
| - {os: ubuntu-latest, r: 'devel'} | ||
| - {os: ubuntu-latest, r: 'release'} | ||
| # - {os: ubuntu-18.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest", http-user-agent: "R/4.0.0 (ubuntu-18.04) R (4.0.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" } | ||
| # - {os: ubuntu-18.04, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | ||
| # - {os: ubuntu-18.04, r: '3.5', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | ||
|
|
||
| env: | ||
| RSPM: ${{ matrix.config.rspm }} | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
|
|
||
| steps: | ||
| - uses: actions/checkout@v2 | ||
|
|
||
| - uses: r-lib/actions/setup-r@v1 | ||
| id: install-r | ||
| with: | ||
| r-version: ${{ matrix.config.r }} | ||
| http-user-agent: ${{ matrix.config.http-user-agent }} | ||
|
|
||
| - uses: r-lib/actions/setup-pandoc@v1 | ||
|
|
||
| - name: Install pak and query dependencies | ||
| run: | | ||
| install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/") | ||
| saveRDS(pak::pkg_deps("local::.", dependencies = TRUE), ".github/r-depends.rds") | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Restore R package cache | ||
| uses: actions/cache@v2 | ||
| with: | ||
| path: | | ||
| ${{ env.R_LIBS_USER }} | ||
| !${{ env.R_LIBS_USER }}/pak | ||
| key: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1-${{ hashFiles('.github/r-depends.rds') }} | ||
| restore-keys: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1- | ||
|
|
||
| - name: Install system dependencies | ||
| if: runner.os == 'Linux' | ||
| run: | | ||
| pak::local_system_requirements(execute = TRUE) | ||
| pak::pkg_system_requirements("rcmdcheck", execute = TRUE) | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Install dependencies | ||
| run: | | ||
| pak::local_install_dev_deps(upgrade = TRUE) | ||
| pak::pkg_install("rcmdcheck") | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Session info | ||
| run: | | ||
| options(width = 100) | ||
| pkgs <- installed.packages()[, "Package"] | ||
| sessioninfo::session_info(pkgs, include_base = TRUE) | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Check | ||
| env: | ||
| _R_CHECK_CRAN_INCOMING_: false | ||
| run: | | ||
| options(crayon.enabled = TRUE) | ||
| rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Show testthat output | ||
| if: always() | ||
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | ||
| shell: bash | ||
|
|
||
| - name: Upload check results | ||
| if: failure() | ||
| uses: actions/upload-artifact@main | ||
| with: | ||
| name: ${{ matrix.config.os }}-r${{ matrix.config.r }}-results | ||
| path: check |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -3,3 +3,5 @@ doc | |
| Meta | ||
| .Rproj.user | ||
| docs | ||
| /doc/ | ||
| /Meta/ | ||
This file was deleted.
Oops, something went wrong.
This file was deleted.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.