Releases · ISA-tools/stato

06 Jan 21:45

2025-01-07

09d218f

STATO v2025-01-07 Latest

Latest

Addition of 45 new classes as part of the continued collaboration with Scientific Evidence Code System (SEVCO) Statistic working group (Brian S Alper, Joanne Dehnbostel, Harold Lehmann, Kenneth Wilkins, Khalid Shahin and more collaborators) in the context of Evidence-Based Medicine on Fast Healthcare Interoperability Resources (EBMonFHIR)

Minor corrections:

addition of orcid for collaborator
ontology metadata update to correct OBO foundry dashboard errors

Known issues:

STATO specific relations trigger an RO relation error reporting in OBO foundry dashboard
TODO: submit STATO relations to RO or ask OBO foundry dashboard to relax the criteria.

URI	Class Label
http://purl.obolibrary.org/obo/STATO_0000664	mean of differences
http://purl.obolibrary.org/obo/STATO_0000665	difference in differences
http://purl.obolibrary.org/obo/STATO_0000666	maximum possible value
http://purl.obolibrary.org/obo/STATO_0000667	minimum possible value
http://purl.obolibrary.org/obo/STATO_0000668	absolute value
http://purl.obolibrary.org/obo/STATO_0000669	sum
http://purl.obolibrary.org/obo/STATO_0000670	incidence rate
http://purl.obolibrary.org/obo/STATO_0000671	hazard rate
http://purl.obolibrary.org/obo/STATO_0000672	event rate
http://purl.obolibrary.org/obo/STATO_0000673	event frequency rate
http://purl.obolibrary.org/obo/STATO_0000674	event frequency
http://purl.obolibrary.org/obo/STATO_0000675	density
http://purl.obolibrary.org/obo/STATO_0000676	number density
http://purl.obolibrary.org/obo/STATO_0000677	hazard ratio
http://purl.obolibrary.org/obo/STATO_0000678	prevalence ratio
http://purl.obolibrary.org/obo/STATO_0000679	diagnostic odd ratio
http://purl.obolibrary.org/obo/STATO_0000680	incidence rate ratio
http://purl.obolibrary.org/obo/STATO_0000681	standardized incidence ratio
http://purl.obolibrary.org/obo/STATO_0000682	kappa
http://purl.obolibrary.org/obo/STATO_0000683	simple chance-corrected agreement coefficient
http://purl.obolibrary.org/obo/STATO_0000684	standard deviation for sample
http://purl.obolibrary.org/obo/STATO_0000685	measure of calibration
http://purl.obolibrary.org/obo/STATO_0000686	mean calibration
http://purl.obolibrary.org/obo/STATO_0000687	calibration slope
http://purl.obolibrary.org/obo/STATO_0000688	calibration intercept
http://purl.obolibrary.org/obo/STATO_0000689	partial area under the roc curve
http://purl.obolibrary.org/obo/STATO_0000690	area under the value-time curve
http://purl.obolibrary.org/obo/STATO_0000691	area under the precision-recall curve
http://purl.obolibrary.org/obo/STATO_0000692	distribution mean
http://purl.obolibrary.org/obo/STATO_0000693	distribution variance
http://purl.obolibrary.org/obo/STATO_0000694	distribution standard deviation
http://purl.obolibrary.org/obo/STATO_0000695	precision-recall curve
http://purl.obolibrary.org/obo/STATO_0000696	value-time curve
http://purl.obolibrary.org/obo/STATO_0000697	homegeneity test
http://purl.obolibrary.org/obo/STATO_0000698	chi-square statistic for homogeneity
http://purl.obolibrary.org/obo/STATO_0000699	t-score
http://purl.obolibrary.org/obo/STATO_0000700	p-value
http://purl.obolibrary.org/obo/STATO_0000701	chi-square test for homogeneity
http://purl.obolibrary.org/obo/STATO_0000702	prior probability
http://purl.obolibrary.org/obo/STATO_0000703	posterior probability
http://purl.obolibrary.org/obo/STATO_0000704	concentration
http://purl.obolibrary.org/obo/STATO_0000705	measurement accuracy
http://purl.obolibrary.org/obo/STATO_0000706	bayesian inference
http://purl.obolibrary.org/obo/STATO_0000707	frequentist inference
http://purl.obolibrary.org/obo/STATO_0000708	Cochran-Armitage Chi-Square Statistic for Trend

Assets 3

10 Jul 22:27

proccaserra

v1.5

b3a1582

STATO v1.5

What's Changed - Major Release:

Major hierarchy reorganisation and extensive definition review following the collaboration with Scientific Evidence Code System (SEVCO) working group (Brian S Alper, Joanne Dehnbostel, Harold Lehmann, Kenneth Wilkins, Khalid Shahin and more collaborators) in the context of Evidence-Based Medicine on Fast Healthcare Interoperability Resources (EBMonFHIR)
75 new classes added (STATO:0000589 to STATO:0000663)
Clearing all errors identified using obofoundry robot tool report function.
Fixing DL profile error reported by @cmungall (issue #89)
Fixing unsatisfiable classes as reported by @henrietteharmse (issue #90)

To enable loading in EMBL-EBI Ontology Lookup Service 4, see here:

Adding RDF/XML serialization as stato.owl
Adding OBO serialization as stato.obo
Adding OWL/XML serialization as stato.owx
Issue 88 by @proccaserra in #91
fixes #90 - adding missing disjoint axioms between occurrent and cont… by @proccaserra in #92
Coka stato by @proccaserra in #94
Bump junit from 4.8.2 to 4.13.1 in /dev/tools/onto-release by @dependabot in #81