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3.16.1
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@MichaelStromberg MichaelStromberg released this 26 Jun 02:11
· 52 commits to main since this release
v3.16.1
d410c14

Features

Issue key Summary
NIR-630 Increased gzip compression level
NIR-651 Renamed TCGA & TumorFusions data sources

Bugs fixed

Unresolved bugs

Issue key Summary
NIR-602 SAUtils CustomVar won't allow missing values for Score columns
NIR-582 Jasix incorrectly closes the JSON header when combining query with header
NIR-504 SingleAnnotation behaves differently in Lambda vs REST API
NIR-220 Nirvana doesn't use the transcript sequence to report the reference amino acids in HGVS p. notations
NIR-219 Nirvana reports ambiguous protein level annotations for CUG start codon variants
NIR-218 Duplicates may be marked as insertions in HGVS
NIR-217 Nirvana produces HGVS insertions notations that are more than one bp apart
NIR-215 Nirvana incorrectly determines gnomAD low complexity regions at translocation breakend boundaries
NIR-212 Annotation lambdas run out of disk space when large amounts of CA are submitted
NIR-91 Nirvana should fully right align duplications in HGVS c. notation
NIR-87 Nirvana should detect duplications in HGVS by looking at the transcript sequence.
NIR-86 Nirvana incorrectly handles insertions where RNA-edit insertions already occur
NIR-75 Nirvana doesn't handle 3' UTR intron HGVS c. notation properly
NIR-57 Nirvana produces bizarre HGVS p. notation (NP_001137434.1:p.(Val701_?_fsTer?))
NIR-56 CDS position goes beyond the CDS sequence length (NM_001300952.1)
NIR-55 Nirvana produces a strange CDS position range for NM_001346067.1
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