Make cmake respect CC and PATH compiler overrides #49
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Cmake does not respect non-system default compilers using the conventional override methods (CC env variable and PATH). https://stackoverflow.com/questions/29902862/how-to-get-cmake-to-use-the-default-compiler-on-system-path
Contributor
Author
|
This was not just that I had to manually override CC after building the makefiles. CMAKE would not run because my system G++ was too old. |
|
I've also found that this is a problem when building the bundled tar dependencies such as HTSLib, which may have their own hard-coded gcc calls in their Makefiles. See, e.g., bioconda/bioconda-recipes#12581 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Cmake does not respect non-system default compilers using the conventional
override methods (CC env variable and PATH).
https://stackoverflow.com/questions/29902862/how-to-get-cmake-to-use-the-default-compiler-on-system-path