Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

INFO/DP field not reported #219

Open
SusiJo opened this issue Oct 11, 2022 · 1 comment
Open

INFO/DP field not reported #219

SusiJo opened this issue Oct 11, 2022 · 1 comment

Comments

@SusiJo
Copy link

SusiJo commented Oct 11, 2022

Hi there,
We are using strelka for one of our pipelines and were wondering if it is possible to output the INFO/DP field in addition to the FORMAT/DP field. We would need that for extracting variant depths with bcftools stats.
Thanks in advance!
@SusiJo SusiJo mentioned this issue Oct 11, 2022
Merged
9 tasks
@faramarzgsm
Copy link

faramarzgsm commented Aug 30, 2024 •
edited
Loading

Hi there,
I want to combine and merge two VCF files produced by strelka2 and gatk-haplotypecaller and then I want to filter variations base on INFO/DP field. How can I add this tag to the output VCF produced by strelka?

If it is impossible now, why you don't add this option to the strelka. This INFO/DP filed is so useful.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@SusiJo @faramarzgsm