Skip to content

Issues: Illumina/strelka

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

129 Open 110 Closed
129 Open 110 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

How is strand bias calculated and what does it mean in this context?
#243 opened Aug 14, 2024 by CraigJAnderson
Will a insertion/deletion at the end of a callRegion be called?
#242 opened Jul 23, 2024 by ray1919
Error calling bam files derived from standard ONT
#241 opened Apr 26, 2024 by nparmalee
Python3
#240 opened Mar 22, 2024 by lculibrk
1
call mtDNA variants from scRNA or WGS
#239 opened Mar 15, 2024 by isadeghi87
DEVELOPER_MODE is true in src release tarballs
#237 opened Feb 8, 2024 by aowenson-imm
GQ and PL fields
#236 opened Jan 9, 2024 by mashid
Strelka filtering out important variant
#235 opened Dec 4, 2023 by yusufzhc
Scripts to extract variant allele frequency (VAF)
#234 opened Oct 18, 2023 by maximus3219
1
Meaning of taskExitCode -9
#232 opened Aug 1, 2023 by Jessime
1
All variants being labeled as "LowEVS"
#231 opened Jul 19, 2023 by ElizabethBorden
1
Incorrect handling of non-N nucleotides with quality zero after Q-score binning
#230 opened Jul 5, 2023 by ivan-mh
Failing to index VCF file
#229 opened May 17, 2023 by acboulet
Number of AD, ADF and ADR should be "R"
#228 opened May 4, 2023 by christopher-schroeder
inconsistent reproducibility of variants
#227 opened Mar 21, 2023 by anoronh4
Only the first Genome Segment called when putting entire chromosome in .bed file
#226 opened Feb 7, 2023 by sergeyvilov
How to detect somatic mutations with allele frequencies nearly 0.01?
#225 opened Jan 10, 2023 by wuyuling327
1
Long error using the code below
#224 opened Dec 2, 2022 by HyojeenLee
Which command to use for somatic calling and RNA sequencing?
#223 opened Dec 2, 2022 by HyojeenLee
CONFIGURATION ERROR: Reference genome mismatch:
#222 opened Dec 2, 2022 by HyojeenLee
Does input fastq need process of splicing in advance?
#221 opened Dec 1, 2022 by HyojeenLee
make process bug
#220 opened Nov 29, 2022 by hzongyao
INFO/DP field not reported
#219 opened Oct 11, 2022 by SusiJo
1
Got WARNING and ERROR info when using StrelkaSomaticWorkflow
#218 opened Oct 9, 2022 by Dragonlongzhilin
2
increase sensitivity
#216 opened Jul 20, 2022 by lmanchon
ProTip! Type g i on any issue or pull request to go back to the issue listing page.