Update to complete splitting code into separate processing and analys…

…is files.
InteragencyEcologicalProgram · Mar 26, 2024 · 25e0c6a · 25e0c6a
1 parent ac3c654
commit 25e0c6a
Show file tree

Hide file tree

Showing 14 changed files with 2,536 additions and 755 deletions.
diff --git a/phyto-final/CSVs/EMP_Stations_All.csv b/phyto-final/CSVs/EMP_Stations_All.csv
diff --git a/phyto-final/CSVs/station_regions.csv b/phyto-final/CSVs/station_regions.csv
@@ -0,0 +1,40 @@
+StationCode,Region
+C3A,Northern Interior Delta
+D24,Northern Interior Delta
+NZ068,Northern Interior Delta
+C9,Southern Interior Delta
+C10A,Southern Interior Delta
+MD10A,Southern Interior Delta
+P8,Southern Interior Delta
+D16,Central Delta
+D19,Central Delta
+D26,Central Delta
+D28A,Central Delta
+D4,Confluence
+D10,Confluence
+D12,Confluence
+D22,Confluence
+D7,Grizzly and Suisun Bay
+D8,Grizzly and Suisun Bay
+NZ032,Grizzly and Suisun Bay
+NZS42,Grizzly and Suisun Bay
+D6,San Pablo Bay
+D41,San Pablo Bay
+D41A,San Pablo Bay
+NZ002,San Pablo Bay
+NZ004,San Pablo Bay
+NZ325,San Pablo Bay
+EZ2,Entrapment Zone
+EZ2-SJR,Entrapment Zone
+EZ6,Entrapment Zone
+EZ6-SJR,Entrapment Zone
+RMB,Upstream
+RCS,Upstream
+RD22,Upstream
+I80,Upstream
+LIS,Upstream
+STTD,Upstream
+BL5,Downstream
+LIB,Downstream
+RYI,Downstream
+RVB,Downstream
diff --git a/phyto-final/CSVs/station_regions_EMP.csv b/phyto-final/CSVs/station_regions_EMP.csv
diff --git a/phyto-final/RData/df_phyto.RData b/phyto-final/RData/df_phyto.RData
diff --git a/phyto-final/RData/df_phyto_FASTR_gen.RData b/phyto-final/RData/df_phyto_FASTR_gen.RData
diff --git a/phyto-final/RData/df_phyto_FASTR_gen_BV.RData b/phyto-final/RData/df_phyto_FASTR_gen_BV.RData
diff --git a/phyto-final/RData/df_phyto_FASTR_grp.RData b/phyto-final/RData/df_phyto_FASTR_grp.RData
diff --git a/phyto-final/RData/df_phyto_FASTR_grp_BV.RData b/phyto-final/RData/df_phyto_FASTR_grp_BV.RData
diff --git a/phyto-final/RData/df_phyto_FASTR_sum.RData b/phyto-final/RData/df_phyto_FASTR_sum.RData
diff --git a/phyto-final/RData/df_phyto_NMDS.RData b/phyto-final/RData/df_phyto_NMDS.RData
diff --git a/phyto-final/analyses/phyto_NMDS_stress.csv b/phyto-final/analyses/phyto_NMDS_stress.csv
@@ -0,0 +1,7 @@
+Year,stress
+2014,0.17163426035862414
+2015,0.21308563651147788
+2016,0.1944142356455662
+2017,0.18958791263284083
+2018,0.1938840696502086
+2019,0.17471661483123263