*** Copyright Notice ***
EDD Basic Stats and Graphs Notebook analysis (EDD BSG Notebook) Copyright (c) 2022, The Regents of the University of California, through Lawrence Berkeley National Laboratory (subject to receipt of any required approvals from the U.S. Dept. of Energy). All rights reserved.
If you have questions about your rights to use or distribute this software, please contact Berkeley Lab's Intellectual Property Office at IPO@lbl.gov.
NOTICE. This Software was developed under funding from the U.S. Department of Energy and the U.S. Government consequently retains certain rights. As such, the U.S. Government has been granted for itself and others acting on its behalf a paid-up, nonexclusive, irrevocable, worldwide license in the Software to reproduce, distribute copies to the public, prepare derivative works, and perform publicly and display publicly, and to permit others to do so.
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**BEFORE STARTING
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**Set up EDD study and import your data. Users are referred to Morrell et al.
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**The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization.
- Authors: Nurgul Kaplan, Christopher Petzold, Yan Chen, Jennifer Gin
- Authors_EDD Utils:Zak Costello, William Morrell, Mark Forrer, Tijana Radivojevic
- Author_Kernel-Jupyter server: Mark Kulawik
- Version: 1.06
Date:20201104
Items:
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- Added a description for DataQuality%
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- Violin plot has been deleted from data quality visuals
Date:20201030
Items:
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- Updating Data Quality metric dataframe (Assay Name, Time Point, DataPointCount, DataQuality% )
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- Violin plot is exported as an additional file. Violin plot "CV per time".
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- Constrain the distribution shown on a violin plot to be within the bounds of the data that is being plotted
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Date:20200908
Items:
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- Renaming report files respectively such as subset_sum_data, subset_full_data after specifying protocol and or assays
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Date:20200724
Items:
- 1.Sorted time_points which is used in bar and line plots
- 2.In Bar graph, changed the order : time_point, omics_type, assay_type