got BLAST to auto install on the EC2 instance

JBEI · Apr 2, 2015 · f678edc · f678edc
1 parent 15fab83
commit f678edc
Showing 1 changed file with 6 additions and 3 deletions.
diff --git a/src/main/resources/aws/.ebextensions/01packages.config b/src/main/resources/aws/.ebextensions/01packages.config
@@ -1,7 +1,10 @@
 {
-  "packages": {
-    "rpm": {
-      "ncbi-blast": "ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.28/ncbi-blast-2.2.28+-1.x86_64.rpm"
+  "commands": {
+    "01_enable_sudo": {
+      "command": "echo Defaults:root \!requiretty >> /etc/sudoers"
+    },
+    "02_install_blast": {
+      "command": "sudo wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.28/ncbi-blast-2.2.28+-1.x86_64.rpm &>> /tmp/install.log && sudo yum localinstall --nogpgcheck --assumeyes ncbi-blast-2.2.28+-1.x86_64.rpm &>> /tmp/install.log"
     }
   }
 }