updating vignettes ...

... and adding pkgdown website
James-Thorson-NOAA · Dec 22, 2023 · 6ea1939 · 6ea1939
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -24,7 +24,10 @@ Suggests:
     testthat,
     knitr,
     rmarkdown,
-    archetypes
+    archetypes,
+    devtools,
+    kableExtra,
+    ggplot2
 Remotes:
     ropensci/rfishbase@fb-21.06,
 License: GPL-3

diff --git a/NEWS.md b/NEWS.md
@@ -1,18 +1,23 @@
-FishLife 1.0.2 (2017-08-01)
-=========================
+# FishLife 3.0.1
+* Adding Zenodo DOI
 
-### NEW FEATURES
+# FishLife 3.0.0
+* Add structural equation modelling and use of class `ape::phylo` to represent evolutionary relatedness
+* Release associated with Thorson et al. (2023) in Methods in Ecology and Evolution
 
-  * Made new shiny package
+# FishLife 2.0.1
+* Change dependencies to load required version of `rfishbase`
 
-### BUG FIXES
+# FishLife 2.0.0
+* Added stock-recruit parameters
+* Release associated with Thorson (2020) in Fish and Fisheries
 
-  * Fixed bugs related to renaming the package `FishLife`
+# FishLife 1.0.2 
+* Made new shiny package
+* Fixed bugs related to renaming the package `FishLife`
 
+# FishLife 1.0.1
+* Fix bug in previous release
 
-FishLife 1.0.0 (2017-07-30)
-=========================
-
-### NEW FEATURES
-
-  * first public release
+# FishLife 1.0.0
+* first public release, associated with Thorson et al. (2017) in Ecological Applications
diff --git a/R/Fit_model.R b/R/Fit_model.R
@@ -694,7 +694,7 @@ function( text = NULL,
   Obj$env$beSilent()
 
   # Print number of parameters
-  ThorsonUtilities::list_parameters( Obj )
+  list_parameters( Obj )
 
   #
   if( run_model==FALSE ){

diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/static/badge_external_active.png b/docs/static/badge_external_active.png
diff --git a/docs/static/icons8-checkmark-24-external-active.png b/docs/static/icons8-checkmark-24-external-active.png
diff --git a/docs/static/icons8-email-send-24.png b/docs/static/icons8-email-send-24.png
diff --git a/docs/static/noaa-fisheries-rgb-2line-horizontal-small.png b/docs/static/noaa-fisheries-rgb-2line-horizontal-small.png