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autopvs1-v2.0

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@JiguangPeng JiguangPeng released this 14 Oct 08:00
· 2 commits to master since this release
  • AutoPVS1 is now compatible with hg19/GRCh37 and hg38/GRCh38.

  • VEP version upgrade to release/104

  • Transcript structure update to UCSC ncbiRefSeq

    • hg19 ncbiRefSeq.txt.gz 20210518
    • hg38 ncbiRefSeq.txt.gz 20210201
  • Population allele frequency database

    • hg19: gnomAD r2.1 exomes and genomes
    • hg38: gnomAD r3.0 genomes
  • Clinvar version update to archive 2021-06

    • Biologically-relevant transcripts update
    • Functional region and hotspot update
    • Pathogenic sites update
    • Exon with frequent LoF update
  • PVS1 levels

    • ClinGen clinical validity update to 20210624
    • Null mouse model update to 20210510