Fix heading levels in raw data notebooks

JuBiotech · Oct 13, 2024 · 54bd0cb · 54bd0cb
1 parent 4fbaf03
commit 54bd0cb
Show file tree

Hide file tree

Showing 3 changed files with 13 additions and 28 deletions.
diff --git a/docs/source/notebooks/Create_results_in_figure_2.ipynb b/docs/source/notebooks/Create_results_in_figure_2.ipynb
@@ -13,10 +13,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "%load_ext autoreload\n",
-    "%autoreload 2\n",
-    "\n",
-    "import pandas\n",
     "import numpy as np\n",
     "import arviz as az\n",
     "from pathlib import Path\n",
@@ -28,7 +24,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "### Exemplary result with a single peak"
+    "## Exemplary result with a single peak"
    ]
   },
   {
@@ -704,7 +700,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "### Exemplary result with a double peak"
+    "## Exemplary result with a double peak"
    ]
   },
   {

diff --git a/docs/source/notebooks/Create_validation_plot_from_raw_data.ipynb b/docs/source/notebooks/Create_validation_plot_from_raw_data.ipynb
@@ -15,14 +15,9 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "%load_ext autoreload\n",
-    "%autoreload 2\n",
-    "\n",
-    "import arviz as az\n",
     "import json\n",
     "import numpy as np\n",
     "import pandas\n",
-    "import pymc as pm\n",
     "from matplotlib import pyplot as plt\n",
     "from pathlib import Path"
    ]
@@ -31,7 +26,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "#### 1) Preparation of evaluation of synthetic data (test 1)"
+    "# Preparation of evaluation of synthetic data (test 1)"
    ]
   },
   {
@@ -48,7 +43,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "#### 2) Prepartion of border-line cases normal vs. skew normal (test 2)"
+    "# Prepartion of border-line cases normal vs. skew normal (test 2)"
    ]
   },
   {
@@ -78,7 +73,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "#### 3) Prepartion of comparison to MultiQuant (test 3)"
+    "# Prepartion of comparison to MultiQuant (test 3)"
    ]
   },
   {
@@ -96,7 +91,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "#### 4) Plotting in one graph (for PeakPerformance paper)"
+    "# Plotting in one graph (for PeakPerformance paper)"
    ]
   },
   {

diff --git a/docs/source/notebooks/Processing_test_1_raw_data.ipynb b/docs/source/notebooks/Processing_test_1_raw_data.ipynb
@@ -1,19 +1,20 @@
 {
  "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Process raw data from synthetic tests"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 1,
    "metadata": {},
    "outputs": [],
    "source": [
-    "%load_ext autoreload\n",
-    "%autoreload 2\n",
-    "\n",
-    "import arviz as az\n",
-    "import json\n",
     "import numpy as np\n",
     "import pandas\n",
-    "import pymc as pm\n",
     "from matplotlib import pyplot as plt\n",
     "from pathlib import Path"
    ]
@@ -36,13 +37,6 @@
     "parameters = [\"mean\", \"std\", \"area\", \"height\", \"alpha\", \"baseline_intercept\", \"baseline_slope\"]"
    ]
   },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "### Prepare data in df_results"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": 5,